Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00448 ATGGAAGACCATGTTTCCCCTGAGGGAAAGGAAGTTAGCTGTTGCGCACCTCCTGGGGCTCAGTTGGAGGAATCAACATCGGTAGATGGTGGAAAGAAAAATTCATCTTCAGAGGACATGTTTAGCAACTTCTCAGAGCTCATGAACTTTGATACCTATGCTGGCTGGAGTAATAGCCCATCCATGACTGATCTGAGTGTGGCTAATGTGTTTTCATTATTTTCCTCAGCGCCATATCCACCACCTGATGGATTGAATTTAGTGGAACAAAGCAATGGTTCATTCTTTATGACAGAAGATAGTGAATTTCACAATGGTATGGAAAGTTCTCCTAGTTGTGTTGAGAGAGTTATATTTCAGCAAATGGACATCCATCTTGGGTTCTTAGATGAAGCAAATGATTCAAATAACTTGGACTCAAAAGAAAAACTTAATGGCAAATCTCAGCAAGTTAATACCTCAGACATGTGCAATTACATAATCTCAAGGTCACCAGGTAGGTCGCTTGATGATAGAATGCTGAGGGCTTTGTCCTTCTTTATGGAATCAGCTGATGAGGGAATGTTGGCACAGGTGTGGGTGCCAACAAAGCATGGTGATGAATTCATCTTAAGCACAAGTCAACAACCGTATTTGTTAGATCCAAAGCTTGCAGGGTATCGTGAAGTGTCAAGGGCATTTACATTTTCTGCAGAAGGAAAGACAAGAACATGTCCTGGGCTTCCTGCTCGCGTGTTTATATCACATGTTCCTGAATGGACCTCCAATGTTGGTTACTACAATAAAACTGAGTATTTAAGGTTGGAGCATGCTAAGAATCACGAGATTCGTGGATCAATTGCTCTTCCTATATCTGATGTGCACTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAAAAGGCTAATTTTGACAGAGAATTAGAAATTTTTTCTCATGCACTCCAGCAGCTTGTAAATTTAAGGACTTCAATGCCTCCACGACTTCTTCCTCAGTGTTTATCAAGTAACAAAAGAGTTGCTTTAACAGAGATAATTGATGTGTTACGTGCCATGTGTCATGCACATAGATTGCCACTTGCACTAACATGGATTCCTTGTTGCTACAGTGAGGGAATAAGAGATGAAACTGAGAGAATACGAATCAAAGAGGGTCATACAAGTTCTAATGAAAAATGTGTCCTATGTATTGAAGAATCAGCTTGCTATGTAAATGATGGAGGGGTAGGAGGATTTGTTCATGCATGCATTGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATATCCCCTTGTTCATCACGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACCTATACCAATGGTGATGATTACATATTAGAATTCTTTCTGCCTGTCAATATGACAGGGAGTTCAGAACAGCAACTTTTATTGGACAATCTCTCAGGTACCATGCGGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGATGCTGAGTTAACAGGAATAGATGGTTCCCAAGGTGGGTTTCCAAAGGAAAAAGTCTCAGGTTTTTTTCCAATGTCCAGGAGAAACTCTGAGATAGCATTCATAAATGGTGACCATGATTCGGTCCAGAAGATGTCCATGAAGACATCTAACATGAGAAATAATGGAACTGAAGCTGTTCATAGCCAGGCAATGAATGGATCAAGAAAGCAGGTTGAGAAAAAGAGAAGCACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTCCAACAATACTTTTCCGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATAAATAAAGTGAACCGTTCTTTGAAGAAGATACAAACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGACTGAAGTTTGATCCTTATACTGGGGGGTTTATTGCCGGAGGATCAATCATGCAGGAAATTGATGCACATAAATATCTTGTGTTTCCTAAGAAAAGTTCTGTGAAAGATCCAAAGCCGGCAACACAAAAAACAGTCTCAGTAGCTCCAGCACCTGGAAGCACTAGGGAGAATTCTACAATTAAGTTGAATGATGATGAAAGTGTTTGTCTGGTGAGAAACAAGTTTGTGCACTCAAGAAATGTTCTTAACTCCAATAGCAGTAAGGGAGAATTGAAGAAAGACAATGTTTCTTCTGATGATTGTTGTGATGATTCAAAATCAATGGCCATGAATGATGGATCATGCCAGAAATCCTGCCTTTGGACCAAGACTCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACTGATGAGGTTGAAGTTGGTGTAGATAGGGTAGAAGGAGCTGATGAACATAACCATCCGACTTCTTCAAGCACTACACACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTCGAGAAACAAAAGCATTCAAAAGTCAAGTCAAATTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGTGATACTATACGTTTCAAGTTTGATCCATCCTCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAATTGCAAAATGGGTCATTCCAGCTCAAATATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAATGTACAGAAATTTTGGGTGACATTGGCACACGTTTTGTGAAGTTTCTTGTCCGTGACGTGCCTTGTGTTTTTAGAAGCCGTGGAAGCAATAGTTGCTTCTTGTCAGATAGCTCATAG 2919 0.406 MEDHVSPEGKEVSCCAPPGAQLEESTSVDGGKKNSSSEDMFSNFSELMNFDTYAGWSNSPSMTDLSVANVFSLFSSAPYPPPDGLNLVEQSNGSFFMTEDSEFHNGMESSPSCVERVIFQQMDIHLGFLDEANDSNNLDSKEKLNGKSQQVNTSDMCNYIISRSPGRSLDDRMLRALSFFMESADEGMLAQVWVPTKHGDEFILSTSQQPYLLDPKLAGYREVSRAFTFSAEGKTRTCPGLPARVFISHVPEWTSNVGYYNKTEYLRLEHAKNHEIRGSIALPISDVHSQVPCAVLELVTTKEKANFDRELEIFSHALQQLVNLRTSMPPRLLPQCLSSNKRVALTEIIDVLRAMCHAHRLPLALTWIPCCYSEGIRDETERIRIKEGHTSSNEKCVLCIEESACYVNDGGVGGFVHACIEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNGDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICKSLRTVSDAELTGIDGSQGGFPKEKVSGFFPMSRRNSEIAFINGDHDSVQKMSMKTSNMRNNGTEAVHSQAMNGSRKQVEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSIMQEIDAHKYLVFPKKSSVKDPKPATQKTVSVAPAPGSTRENSTIKLNDDESVCLVRNKFVHSRNVLNSNSSKGELKKDNVSSDDCCDDSKSMAMNDGSCQKSCLWTKTQDCPEQTCSISLVTDEVEVGVDRVEGADEHNHPTSSSTTHSSNGSGSMMHGSSSCSQSFEKQKHSKVKSNCVDSGSKMIVKASYRGDTIRFKFDPSSGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVMLVNDSDLQECTEILGDIGTRFVKFLVRDVPCVFRSRGSNSCFLSDSS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00448 972 Pfam RWP-RK domain 603 651 IPR003035 -
Gma12g00448 972 MobiDBLite consensus disorder prediction 707 728 - -
Gma12g00448 972 MobiDBLite consensus disorder prediction 1 38 - -
Gma12g00448 972 Pfam PB1 domain 875 953 IPR000270 GO:0005515
Gma12g00448 972 ProSiteProfiles PB1 domain profile. 872 954 IPR000270 GO:0005515
Gma12g00448 972 CDD PB1_NLP 873 953 IPR034891 -
Gma12g00448 972 SMART PB1_new 872 954 IPR000270 GO:0005515
Gma12g00448 972 Gene3D - 869 949 - -
Gma12g00448 972 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 969 - -
Gma12g00448 972 SUPERFAMILY CAD & PB1 domains 869 956 - -
Gma12g00448 972 MobiDBLite consensus disorder prediction 820 850 - -
Gma12g00448 972 ProSiteProfiles RWP-RK domain profile. 583 671 IPR003035 -
Gma12g00448 972 PANTHER PROTEIN NLP8 5 969 IPR045012 GO:0003700
Gma12g00448 972 MobiDBLite consensus disorder prediction 826 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00448 Gma-Chr12 3655240 3659576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00448 25 968 NLP Transcription Factor Family AT2G43500 50.156 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gma12g00448 PB1 2.5e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00448 - - gmx:100793770 1890.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00448 12 3655240 3659576 Gma12g00448 12 3655240 3659576 ECH
Gma12g00448 12 3655240 3659576 Gma11g01148 11 9655663 9660015 GST
Gma13g03098 13 45234191 45239938 Gma12g00448 12 3655240 3659576 PCT
Gma15g00266 15 2288704 2296720 Gma12g00448 12 3655240 3659576 PCT
Gma12g00448 12 3655240 3659576 Gma13g03098 13 45234191 45239938 PCT
Gma12g00448 12 3655240 3659576 Gma15g00266 15 2288704 2296720 PCT