Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00446 ATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGATTGGTATAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGACCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAAACGACCCCAATTTATGCCATTGAGGATAGTAATGGAAGGCATCGTATGCTAAAATATACTCCAGAGCACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCCATTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCGGACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGAGATAGGTAATCAAGCGAAAAGGAAGGGAGGGCAAACCAAAGAAGGAATTGCTAGGTGTACTTTTGAAGACAAAATTCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTGACAACAGCATTGCAGCCTCGTGACATGACCTGGAAAGGAATGAGAACTGTCGCAGAATTGAGAAGAGAACACAATCTTCCTATTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTGATTCCCAAGTCTCTACAAGCGAGTCTACCCTTTGCATCAAAACCGAAGGATATATCCAAGCGTAATAAGCCGTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCTCTTGTTCAACACCTTCAGTTAATAAATAGTGAGAAGGTCAAAAAGAGAAAGCTTAAGGAAGAGAATAAGAGGAAAGCACTTGAGGCAGAGAGAACCAAAGAAGAGCAGTTGTTGAGAAAGCGCCAGAGAGAAGAGAGACGAGACAAATACCGGAAGGAAGACAAGCAGAATAAGAAGATTCGGAGAGCAGAGCTTATACCAAATGCTTTTGTGAGGTTGCCACAGTTACAAGGAAGGATCCCTGAGGATGTGATCCTGAGAAATGCTAGTGAGAGAGCGTGGCATGTCAAAACACGATATGTTGAAGAGAAATTATATTTTGATGATGGGTGGAGGGCTTTCCATCAAGAAAACTGCTTAGGACAAGCAGACTTTCTTGTCTTCAAGCATGAACGGAGAAATGAGTTCGTGGTACTAATCCTTCAATTATCAACACAGTGTCAAAAGCCTTTGGTAAAGATGGAGGAGGAGCAAGCAGCAACACAACTAGTTGAGGAGCCAGACAGCTCTTCCGATGATGATGATGAAGAGAGTGGAGAAGAATTCGGTGCTGGATTCAATCTTCAAAGTCATCATAGAAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCAATGCTGAAGATCCTCTTCCACAATATGTATTTGATCCAGAAATCTGTATTCATCCGGAGAATCATTTTTTTAAAGCAAAGCTCTACAGAACTAGACCCAATGAATTGCATATTCCAGGAAATGCCATTCAAGAATTTTCCCTTACTCTTCCTGAAAAGATCACCCTTATATGTTGTCAACCCTGCCAGCGCAAGGATATTCCAATGAATGAATTGGGAGACTATCATCATAACTTGACACCCATCCGCATAAAGTATCAGGAAGTGACAGGAATAGTGTGTAGGTGGCAAGATCATAGAATATATATCAAGGGTTGGGCAAGCTTTTGTAGAAGGAATAAGATTGAAAGAAATGATACATGCTTCTGTGAAGTTATATCAGGGGAAGACCAAGTAGTAAAAACACTACGGGTGCATGTTGCTAGGAGGAGATGA 2028 0.4181 MVEYFDPYHPILVGGIGIGEENVGYMQARLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPIYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAIQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNQAKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDMTWKGMRTVAELRREHNLPIPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDISKRNKPLLEERRGRGVVMEPRERKVHALVQHLQLINSEKVKKRKLKEENKRKALEAERTKEEQLLRKRQREERRDKYRKEDKQNKKIRRAELIPNAFVRLPQLQGRIPEDVILRNASERAWHVKTRYVEEKLYFDDGWRAFHQENCLGQADFLVFKHERRNEFVVLILQLSTQCQKPLVKMEEEQAATQLVEEPDSSSDDDDEESGEEFGAGFNLQSHHRRACKRETASSSNPNAEDPLPQYVFDPEICIHPENHFFKAKLYRTRPNELHIPGNAIQEFSLTLPEKITLICCQPCQRKDIPMNELGDYHHNLTPIRIKYQEVTGIVCRWQDHRIYIKGWASFCRRNKIERNDTCFCEVISGEDQVVKTLRVHVARRR 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00446 675 PANTHER RIBOSOME BIOGENESIS PROTEIN 1 421 IPR039761 GO:0042254
Gma12g00446 675 PANTHER BNAC08G44910D PROTEIN 1 421 - -
Gma12g00446 675 Gene3D - 543 675 IPR015300 -
Gma12g00446 675 SUPERFAMILY DNA-binding pseudobarrel domain 391 467 IPR015300 -
Gma12g00446 675 Gene3D - 369 471 IPR015300 -
Gma12g00446 675 Pfam B3 DNA binding domain 390 466 IPR003340 GO:0003677
Gma12g00446 675 MobiDBLite consensus disorder prediction 482 535 - -
Gma12g00446 675 SMART DUF663_2 1 221 IPR007034 -
Gma12g00446 675 ProSiteProfiles B3 DNA-binding domain profile. 391 469 IPR003340 GO:0003677
Gma12g00446 675 MobiDBLite consensus disorder prediction 340 381 - -
Gma12g00446 675 Coils Coil 333 378 - -
Gma12g00446 675 SMART B3_2 382 469 IPR003340 GO:0003677
Gma12g00446 675 SUPERFAMILY DNA-binding pseudobarrel domain 549 671 IPR015300 -
Gma12g00446 675 MobiDBLite consensus disorder prediction 492 506 - -
Gma12g00446 675 CDD B3_DNA 391 466 IPR003340 GO:0003677
Gma12g00446 675 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 4 222 IPR007034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00446 Gma-Chr12 3635941 3644985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00446 390 673 B3 DNA Binding Superfamily AT3G06160 24.671 3.41e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma12g00446 RIBIOP_C 2.5e-77 CL0575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00446 K14569 - gmx:100792176 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00446 12 3635941 3644985 Gma11g01144 11 9624393 9633065 GST