Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00437 ATGTACCTCTATCAAGTATCATTCCAATTTCTATTTCATTGTTCCTCTATCACAATGGGAGACTTTTCATTACACGAAAACAACATGGATTATCATCAGGACAACCTTGCAGTCTTCTTCACTATCATCAAGAACACCAAGCTACTGAAAGTCCCAGAGGAGTTCCTTAAGCATTTGAATGAAGACTTGTGGAGTAATGAAGTTCTTATAGGCCCTTCTGGTGATAAGTGGCTAGTAACTATTTGGAAGAAAGGAAATGACGTGTATATGAAGAATGGTTGGTCACAATTTCTGAAAGACAACTCAGTGGTGCTTGATGAGTTCTTTCTTTTCACATATCATGGAGGGAACTGCTTCCATGTTCAAATTTTTGGTGGGAATGGATTGGAGAGGCTATGCCTCGAAGAAACAAGACAAGAACAAGCTGCCATCCCTCAATTTTTTGATCTGCCTTTCAGCAACAATGCCTCACTCTTTGATGGATATGAGATAAAGAAAACAAGACAAGAACAAGCTTCCATCCCAAGTTTGGCAAGGACAAAAAACAAGAGTAAACAAAGAAAAACTTCTGCTGGTTCATTACACCACCATGAATCGAAGTCTTGTCAAGAAGATCTTCCTTTCTGCAACAAAGCCTTACTTTCTAAGGACTTCCCAAAGCCTATGAGTTCAATCAAAATTGAAAGTTCAGAAGCATGCAAATTGGTCGAGTCCTTTACCTCTCGCGATCCTCATTGGAAGAACCTCATGACAAAATGCAATGTGGAAGATCATTGCACATTGCACATTGCTACTGAGTTTGCCTGTAAGTACATTCCTGAAGCAGTGAAGCAGATCATTCTTTGGAATTCGGAAGGAAAATTTTGGGAAGTGGAAGTGGATTGTTTAAGATATCAAAATAAAAGGTATACTCAGATTTACGACAGGATGGGGAAAGTTCGTGCGTGA 948 0.3935 MYLYQVSFQFLFHCSSITMGDFSLHENNMDYHQDNLAVFFTIIKNTKLLKVPEEFLKHLNEDLWSNEVLIGPSGDKWLVTIWKKGNDVYMKNGWSQFLKDNSVVLDEFFLFTYHGGNCFHVQIFGGNGLERLCLEETRQEQAAIPQFFDLPFSNNASLFDGYEIKKTRQEQASIPSLARTKNKSKQRKTSAGSLHHHESKSCQEDLPFCNKALLSKDFPKPMSSIKIESSEACKLVESFTSRDPHWKNLMTKCNVEDHCTLHIATEFACKYIPEAVKQIILWNSEGKFWEVEVDCLRYQNKRYTQIYDRMGKVRA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00437 315 MobiDBLite consensus disorder prediction 170 198 - -
Gma12g00437 315 SUPERFAMILY DNA-binding pseudobarrel domain 34 127 IPR015300 -
Gma12g00437 315 SUPERFAMILY DNA-binding pseudobarrel domain 242 294 IPR015300 -
Gma12g00437 315 ProSiteProfiles B3 DNA-binding domain profile. 34 127 IPR003340 GO:0003677
Gma12g00437 315 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 31 310 - -
Gma12g00437 315 PANTHER B3 DOMAIN-CONTAINING 31 310 - -
Gma12g00437 315 CDD B3_DNA 39 124 IPR003340 GO:0003677
Gma12g00437 315 Pfam B3 DNA binding domain 46 125 IPR003340 GO:0003677
Gma12g00437 315 Gene3D - 225 309 IPR015300 -
Gma12g00437 315 Gene3D - 32 128 IPR015300 -
Gma12g00437 315 SMART B3_2 39 127 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00437 Gma-Chr12 3577087 3578688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00437 37 173 REM Transcription Factor Family AT3G06220 28.467 1.04e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma12g00437 B3 2.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00437 - - gmx:100809844 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00437 12 3577087 3578688 Gma12g00437 12 3577087 3578688 ECH
Gma12g00437 12 3577087 3578688 Gma11g01135 11 9565617 9576055 GST