Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00436 ATGCCGCACCCTTCTTTCCACAAGCTTCTTCTACCCTCCACTGTCCAACCCAACCAACAACTGAGGCTTCCAGATAATTTTATGAGGAAATATGGGGGTGAACTATTGCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAGTATTGGTTCCTTGATGGTTGGAAAGAGTTTGTTAAACACTATTCAATTAGCATTGGATACTTGTTGGTATTCAAATACGAAGGAAAGTCATCTTTCAGTGTCCATATTTTTAATTTGGCTACCTCTGAGATAAACTATCAATCAGCCATGCGAAGCAGTAATGAAGGGCTTCACTTCACAAATCGTCTTAAATTATTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCTCGGATTCATCACCTTCCCACCTTGCTCCCAGTTCATTGCAAAATCAAGCTCTTACTGGATCAGTAGATAAAATGACGCCTGGGAAGAGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTAATGCCCATTCTTCAAGAATTGCCAATTCACTAGATAATCGATTGACCAGAGACATAGGACTTCAGTTTAATGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAATTGCGTGCTTCCATGGAGGAAAGGATGAAAAAAACTACAAGAAAGAAGCGAAAATCAGATGGCCAAGATCCCTCTGCTGAACACGAAGAGGAGGTAGAAATGCGCTTGAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTAACAGCAGAAGAAAGAGAGAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCATCCTATTTATATAGGGGATGCATAATGTATCTGCCATCCTGCTTTGCAGAAAAGCATTTGAATGGAGTTTCAGGGTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTGTGTTTGAGCTGCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACTGTCTTTCGTGTTATTGAGGATGTGGGATTGTTGAGCCCTCCTTTGCAGCAGAACCAAAACATGAGCTCGGCTAAAATGCTGAACACTCCCTTGCAGCAACACCTCACTTCGACTAAAATGGTTAGAAATCAGCAGCAGCCACAGCACTTTTCACGGTTCCTGTTAGTTGAGGTGGCAGCGCCATACAGTACTGATTAA 1359 0.4202 MPHPSFHKLLLPSTVQPNQQLRLPDNFMRKYGGELLPIVTLSVPDGSVWRVGLKKADNKYWFLDGWKEFVKHYSISIGYLLVFKYEGKSSFSVHIFNLATSEINYQSAMRSSNEGLHFTNRLKLFEEMEDEDSIEISDSSPSHLAPSSLQNQALTGSVDKMTPGKSYTPPALQNLFNGSKLNSINWGEGGNAHSSRIANSLDNRLTRDIGLQFNAVEFKRSTEELKLRASMEERMKKTTRKKRKSDGQDPSAEHEEEVEMRLRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTVFRVIEDVGLLSPPLQQNQNMSSAKMLNTPLQQHLTSTKMVRNQQQPQHFSRFLLVEVAAPYSTD 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00436 452 SUPERFAMILY DNA-binding pseudobarrel domain 2 97 IPR015300 -
Gma12g00436 452 ProSiteProfiles B3 DNA-binding domain profile. 297 392 IPR003340 GO:0003677
Gma12g00436 452 PANTHER B3 DOMAIN-CONTAINING 1 420 - -
Gma12g00436 452 CDD B3_DNA 4 97 IPR003340 GO:0003677
Gma12g00436 452 Gene3D - 1 99 IPR015300 -
Gma12g00436 452 MobiDBLite consensus disorder prediction 231 257 - -
Gma12g00436 452 CDD B3_DNA 295 390 IPR003340 GO:0003677
Gma12g00436 452 SMART B3_2 297 392 IPR003340 GO:0003677
Gma12g00436 452 SMART B3_2 6 99 IPR003340 GO:0003677
Gma12g00436 452 MobiDBLite consensus disorder prediction 242 257 - -
Gma12g00436 452 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Gma12g00436 452 SUPERFAMILY DNA-binding pseudobarrel domain 290 390 IPR015300 -
Gma12g00436 452 Gene3D - 274 395 IPR015300 -
Gma12g00436 452 Pfam B3 DNA binding domain 300 390 IPR003340 GO:0003677
Gma12g00436 452 Pfam B3 DNA binding domain 6 96 IPR003340 GO:0003677
Gma12g00436 452 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00436 Gma-Chr12 3565767 3572470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00436 1 396 B3 DNA Binding Superfamily AT3G18990 52.868 2.82e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma12g00436 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00436 - - gmx:100813285 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00436 12 3565767 3572470 Gma12g00436 12 3565767 3572470 ECH
Gma12g00436 12 3565767 3572470 Gma11g01134 11 9558983 9562226 GST