Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00435 ATGAGTACTGGTGCCCAGAGATACCCTGATTTCTTCAAAGTCTTCCTCCCAGAGAGGCACTCTGAGAGAATGCTTATACCAAATGCTTTTGTGAGGTTGCCACAGTTACAAGGAAGGATCCCTGAGGATGTGATCCTGAGAAATGCTAGTGGGAGAGTGTGGCATGTCAAAACACGATATGTTGGAGAGAAATTATATTTTGATGATGGGTGGAGGGCTTTCCATCAAGAAAACTGCTTAGGCCAAGCAGACTTTCTTGTCTTCAAGCTTGAACGGAGAAATGAGTTCGTGGTACTAATCCTTCAATTATCAACACAGTGTCAAAAGCCTTTGGTAAAGATGGAGGAGGAGCAAGCAGCAACACAACTAGTTGAGGAGCCAGACAGCTCTTCCGATGATGATGATGAAGAGAGTGGAGAAGAATTCAGTGCTGGATTCAATCTTCAAAGTCATCATAGAAGAGCTTGCAAAAGGGAGACTGCATCAAGTTCCAACCCCAATGCTGAAGATCCTCTTCCAGAATATGTATTTGATCCACAAATGTGTATTCATCCGGAGAATCATTTTTTTAAAGCAAAGCTCTACAGAACTAGACCCAACGAATTGCATATTCCAGGAAATGCCATTCAAGAATTTTCCCTTACTCTTCCTGAAAAGATCACCCTTATATGTTGTCAACCCTGCCAGCGCAAGGATATTCCAATGAATGAATTGGGAGACTATCATCATAATTTGACACCCATCCGCATAAAGTATCAGGAAGTGACAGGAAGAGATTTGTTCTTCTTTGAGCTGAAGCTTCTCTGGGAGAGGCTGAGTGAGAATCTCATAAACTTCATTTGA 843 0.4223 MSTGAQRYPDFFKVFLPERHSERMLIPNAFVRLPQLQGRIPEDVILRNASGRVWHVKTRYVGEKLYFDDGWRAFHQENCLGQADFLVFKLERRNEFVVLILQLSTQCQKPLVKMEEEQAATQLVEEPDSSSDDDDEESGEEFSAGFNLQSHHRRACKRETASSSNPNAEDPLPEYVFDPQMCIHPENHFFKAKLYRTRPNELHIPGNAIQEFSLTLPEKITLICCQPCQRKDIPMNELGDYHHNLTPIRIKYQEVTGRDLFFFELKLLWERLSENLINFI 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00435 280 MobiDBLite consensus disorder prediction 127 141 - -
Gma12g00435 280 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Gma12g00435 280 CDD B3_DNA 9 101 IPR003340 GO:0003677
Gma12g00435 280 Gene3D - 3 107 IPR015300 -
Gma12g00435 280 SMART B3_2 11 104 IPR003340 GO:0003677
Gma12g00435 280 PANTHER B3 DOMAIN-CONTAINING 6 217 - -
Gma12g00435 280 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Gma12g00435 280 MobiDBLite consensus disorder prediction 118 170 - -
Gma12g00435 280 Pfam B3 DNA binding domain 11 101 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00435 Gma-Chr12 3563564 3565684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00435 11 176 B3 DNA Binding Superfamily AT5G66980 29.651 2.00e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma12g00435 B3 9.9e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00435 - - gmx:100810594 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00435 12 3563564 3565684 Gma11g01133 11 9548535 9549529 GST