Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00424 ATGGTCGTCGTCGTCGCCGCCGCGTTTCTTGTCGTCACCTACTCCCGCCTCATCGCGCGCCACCTCAGACCACCCGTCCACCGCCTCCTCCGCCGCTTCCGACGCCGCCGCTTCCTCCCCTCCTCCGTCGGCGACCTCGAGTCCCTCCCCTACGATTCTCCCTTCGACGGACCGCACGTGTTCTCCCCCTACGGTTTGGACGAAACGGTTATTAAAACAATCCCGTTCTCGCTTTATACAGCGAAATACGACGCGCGTTTTGATGAGTCTCGCTACGACTGCGCCGTTTGCTTGCTCGAATTCGAAGACGAGGATTACGTAAGAACGCTTCCCGTTTGTTCACACACGTTCCACGTGGACTGCATCGACGCGTGGCTTCGCTCGCACGCTAACTGTCCTCTCTGCCGCGCTGGAGTTCTCTGCACCGATTCACCTTTCACTCCGATGATGGCCGCTAGAATCCGACCGAGCCTCGACGACGACACAATTCTCCACCGTATCAGTATAGATCCTCTCATCGATCTGCCGCCGCAGCCTGCGTCGGCGGTGGCTATATCCTCCGTGTCGGAGATTACTCCCTGCGTCGACGAGAACACTCCGAGGAGGAACCAGAACCATGCGAACGTTAACTCAGAGGATTGTTTTAGGGATTTTCTGCTGAAGAGGTCTTACTCGTTTGGATTTGAACGGAGTCTGGCGTCGGAGAGGATGGTGATGGAACCGGCGACGGCGTCGCCGTGGCGGTACCGGAGAGGGAGTAGTAGTTTCTGGAGCAAGAGGCCCTCGCCATTCGGATCATTGGGGAAGCCGAGGGTGTTTTCGTTCAGGTATTATAGAGGGATGAAGTCACCGTTCTTCCGGAGGAGGGGTTTTTTCCCGTTGTCGGAGTCGAGCGTGAGGTACGGCAGCGGGGGGAGCTCGTCGCGGCGGAGCAAGTCGATAGCGAGTCCGATGTTTCTGCGGTCGTCGGGGGTGGCAGCCGCGGCGGCGTTCTCGTCGAGCCGGCTGAGGTGCGGGGATCCCGAGGCGCTGCTGTCGCCGGAGAGGTTTAACCGGAGGTGA 1062 0.5951 MVVVVAAAFLVVTYSRLIARHLRPPVHRLLRRFRRRRFLPSSVGDLESLPYDSPFDGPHVFSPYGLDETVIKTIPFSLYTAKYDARFDESRYDCAVCLLEFEDEDYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLCTDSPFTPMMAARIRPSLDDDTILHRISIDPLIDLPPQPASAVAISSVSEITPCVDENTPRRNQNHANVNSEDCFRDFLLKRSYSFGFERSLASERMVMEPATASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYGSGGSSSRRSKSIASPMFLRSSGVAAAAAFSSSRLRCGDPEALLSPERFNRR 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00424 353 SMART ring_2 94 135 IPR001841 -
Gma12g00424 353 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 325 - -
Gma12g00424 353 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Gma12g00424 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 140 IPR013083 -
Gma12g00424 353 Pfam Ring finger domain 93 136 IPR001841 -
Gma12g00424 353 SUPERFAMILY RING/U-box 78 142 - -
Gma12g00424 353 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 325 IPR044675 -
Gma12g00424 353 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00424 Gma-Chr12 3478736 3479797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00424 1 353 C3H Transcription Factor Family AT3G18930 50.904 4.24e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00424 - K19041 gmx:100795347 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00424 12 3478736 3479797 Gma12g00424 12 3478736 3479797 ECH
Gma12g00424 12 3478736 3479797 Gma11g01120 11 9454445 9456279 GST