Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00416 ATGAACATCCAGACAAGAACTGTTGAAGAGTCTATGCGGCACTCATATGGAGGATCAGGATGGTCACTCAAATATGAAGAGAAGCATTTCTACGAATTGAAATTTTCAGCGGTGGTTTTGGATTGCAATTTGAAGAGGAACTATGGAAGATTCGGCAACACCTTCAACTGCTTTGGCTTACCTCAATCCTTCCTATTGGGACGAAAGGTTCTCGAAGGAGGAGCAATACGAGTGGTTCTAGGATTATTCCTATTTTCGCCACTTGATTCAACCCCATCTGGAACTATGGATGTATTGTTCGTGGACAGTGGTAACCCATGGAATCCAAAGCCTGAAACTATATCCAAGGTCATGGCCACGTTGAAAGGTGTTCACGGGGTTTTGAAAGCTGGTGGCACATTTATCTCAGTAACTTTTGGACAGCCACATTTCAGGCGCCCTATATTTAATGCACCAGATTTCAGCTGGTCTGTTGAGTGGACTACTTTTGGTGAAACCTTTCACTATTTTGTCTATGTTCTGAAAAAGGGACAGAGATCGTCACATGATGATATTCCACCCGTTAAGAGATTATATAAAGCAAAGCAAGTGCAAAAACTTGCAAAGCCATTGAATCGTTTCGTTTCGGAGGTGGCGGATATGGACGATTACGCGAGCAGCGACGAGGATTACCATTACGACTCCGATCAGGAGGACTCCGTCGAGGCCTACGAAAACGACGAGAATTACGCCTTGCTTTCTTCCAAGGGCCCCACTACTAAGATCACAACCCACATTTTTTTGCAGAAGGAGGATTTGCGCAGAGTGATGGACATGCTATCGGTGAGAGAGCAACATGCTCGTACTCTGCTTATTTTTCATCGTTGGGATGTGGAGAATCTGTTTGAAGTGTATGTAGACAAGGGGAAATCATTTCTCTTTGCTGAAGCTGGTGTTAGTGTGGATGAACATCGTGACTCTGACTCACCTGTTCCTCCTGATTTCATGTGCAACATTTGTATGGATGAAGTTCCTAGTAGCAAAACAACGAGAATGGACTGCGGTCACTGCTTTTGCAACGGCTGTTGGATAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATTAGATGCATGGAACACAAGTGCAATTCCATATGTGATGAAGCTGTTGTAAGAACTCTACTCAGTAGAGAGCACTCTCATATGGCTGAGAAATATGAACGCTTTCTGCTTGAATCTTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAACTGTGTGAGGTAGAATGTTCATGTGGTGTACAATTTTGTTTTAGTTGTTTGTCAGAAGCACACTCCCCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGACGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAACCATGTCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGCTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACCGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACAGCTGAACGTGCAAAGAGGGATCTATATCGGTATATGCACTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGATTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTTCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGAGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGACAGACGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAACAGCTTGAAGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGACAAGGTTGTTGAGATAAGGATGCAGATACTCAACCTTTCTACAATTATTGACAAACTTTGTCAAAAAATGTATGAATGCATCGAGAATGATCTATTGGGTTCTCTCAATCTTGGCATTCATAGTATTGCTCCATACAAGTCAAAGGGCATTGAGAGGGCATCAGAACTTTCAGTTTGCTGGAACAACAAAGTCAATAATACTGGTGTAACAGAAGAACTTGATCGACCATCTGGATCAGGGAGTTCAGAGGATAGTGGATGCTCTTCTCGTAAGCGTCCTAGAAAAGAGGGTCTTGGAGGAGGCGTACAGGTCTAA 2337 0.4211 MNIQTRTVEESMRHSYGGSGWSLKYEEKHFYELKFSAVVLDCNLKRNYGRFGNTFNCFGLPQSFLLGRKVLEGGAIRVVLGLFLFSPLDSTPSGTMDVLFVDSGNPWNPKPETISKVMATLKGVHGVLKAGGTFISVTFGQPHFRRPIFNAPDFSWSVEWTTFGETFHYFVYVLKKGQRSSHDDIPPVKRLYKAKQVQKLAKPLNRFVSEVADMDDYASSDEDYHYDSDQEDSVEAYENDENYALLSSKGPTTKITTHIFLQKEDLRRVMDMLSVREQHARTLLIFHRWDVENLFEVYVDKGKSFLFAEAGVSVDEHRDSDSPVPPDFMCNICMDEVPSSKTTRMDCGHCFCNGCWIEHFIVKINEGQSKRIRCMEHKCNSICDEAVVRTLLSREHSHMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEVECSCGVQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKISISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMTDAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLNLGIHSIAPYKSKGIERASELSVCWNNKVNNTGVTEELDRPSGSGSSEDSGCSSRKRPRKEGLGGGVQV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00416 778 ProSiteProfiles TRIAD supradomain profile. 326 540 IPR044066 -
Gma12g00416 778 SUPERFAMILY RING/U-box 326 413 - -
Gma12g00416 778 SUPERFAMILY RING/U-box 471 528 - -
Gma12g00416 778 Pfam IBR domain, a half RING-finger domain 401 463 IPR002867 -
Gma12g00416 778 MobiDBLite consensus disorder prediction 742 760 - -
Gma12g00416 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 415 IPR013083 -
Gma12g00416 778 SMART ibrneu5 471 536 IPR002867 -
Gma12g00416 778 SMART ibrneu5 401 463 IPR002867 -
Gma12g00416 778 CDD RING-HC_RBR_TRIAD1 328 380 - -
Gma12g00416 778 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 218 721 IPR031127 GO:0004842|GO:0016567
Gma12g00416 778 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 218 721 - -
Gma12g00416 778 Gene3D Vaccinia Virus protein VP39 91 193 IPR029063 -
Gma12g00416 778 SUPERFAMILY RING/U-box 401 469 - -
Gma12g00416 778 Pfam Ariadne domain 540 774 IPR045840 -
Gma12g00416 778 Gene3D - 459 706 - -
Gma12g00416 778 ProSiteProfiles Zinc finger RING-type profile. 330 378 IPR001841 -
Gma12g00416 778 MobiDBLite consensus disorder prediction 742 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00416 Gma-Chr12 3413387 3424111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00416 270 764 ARIADNE family AT2G16090 69.138 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00416 K11968 - gmx:100783343 1148.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00416 12 3413387 3424111 Gma12g00416 12 3413387 3424111 ECH
Gma12g00416 12 3413387 3424111 Gma11g01110 11 9384872 9388691 GST