Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00392 ATGACAGAGTCGGCAGGGCCAAGTGTGAGTTTGAAACTTGTTGTGTTAGTAGCTATTCTAGTCGTCTCCGCGTTGCTGATTCTGCTTCTGATCTTCTTCCTCTGCTTCCGCAAGAAGCGGAACCTGGCGGCCAAACACAGCTCAGGGAGCATCCCTCTGGTGTCCAAGGAGATCACCATGGTCAAGGCCTCGGATCCGAAGAAGATGGAGGAGGCGGAGGCCAAGGTTGAAATTGGTGGGGCCCAGCACCACCAAAGCAGCGAACTAGTATCGGGGGAGGATCCCGATATAGGGTGGGGCCGCTGGTACACCATTTGGGAAGTGGAACTCGCCACGCGCGGGTTTGCGGAAGGGAATGTTATTGGAGAAGGAGGCTACGCCGTTGTGTACAGAGGTGTTCTGCACGATGCTTCCTTTGTGGCTGTCAAGAATCTTCTCAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAAGTGGAGGTTGAAGCTATTGGAAAAGTAAGGCATAAAAATTTGGTTCGTTTGGTAGGATATTGTGCAGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTGGAACAATGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACTGCAAAAGGGTTAGCCtatttgcatgaaggtttagagcccaaagttgtgcaccgggatataaaatccagtaacattcttttagataaaaactggaatgccaaagtatcagattttggactagccaagctcttaggatctgagaaatcccatgtgactacgcgtgtaatgggaacatttggatatgttgcacctgagtatgcaagctcgggtatgcttaatgagcgcagtgatgtgtatagctttggagttcttctcatggagataatcacaggaagaagccccattgattattcaagaccacccggagagATGAATTTGGTAGATTGGTTTAAGGCAATGGTAGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCTTTAATTGAGATTCCTCCCCCTCCAAGATCTTTGAAGAGAGTTTTATTGATTTGTCTGCGCTGTATAGACATGGATGTCGTTAAGCGACCAAAGATGGGTCAAATTATTCATATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGTTCAGTTAGAGAAAAAGATCCTGTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCAACAAAGCATGCAGAAACCGTAGAAAAATCAAGATGGAGATAA 1302 0.3656 MTESAGPSVSLKLVVLVAILVVSALLILLLIFFLCFRKKRNLAAKHSSGSIPLVSKEITMVKASDPKKMEEAEAKVEIGGAQHHQSSELVSGEDPDIGWGRWYTIWEVELATRGFAEGNVIGEGGYAVVYRGVLHDASFVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKSHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLIEIPPPPRSLKRVLLICLRCIDMDVVKRPKMGQIIHMLETDDFPFRSELRSVREKDPVPSHADVSIKVPYPPTKHAETVEKSRWR 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00392 433 PANTHER OS01G0323000 PROTEIN 1 433 - -
Gma12g00392 433 ProSiteProfiles Protein kinase domain profile. 115 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00392 433 PIRSF TyrPK_CSF1-R 207 391 - -
Gma12g00392 433 PIRSF TyrPK_CSF1-R 2 42 - -
Gma12g00392 433 PIRSF TyrPK_CSF1-R 118 207 - -
Gma12g00392 433 Gene3D Transferase(Phosphotransferase) domain 1 191 398 - -
Gma12g00392 433 PANTHER RECEPTOR-LIKE KINASE 1 433 - -
Gma12g00392 433 SUPERFAMILY Protein kinase-like (PK-like) 98 394 IPR011009 -
Gma12g00392 433 SMART serkin_6 115 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00392 433 ProSitePatterns Protein kinases ATP-binding region signature. 121 143 IPR017441 GO:0005524
Gma12g00392 433 Gene3D Phosphorylase Kinase; domain 1 99 190 - -
Gma12g00392 433 Pfam Protein tyrosine and serine/threonine kinase 118 386 IPR001245 GO:0004672|GO:0006468
Gma12g00392 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Gma12g00392 433 CDD STKc_IRAK 121 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00392 Gma-Chr12 3200985 3204911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00392 4 389 Trihelix Transcription Factor Family AT1G70460 41.626 7.65e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gma12g00392 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00392 - - gmx:100786349 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00392 12 3200985 3204911 Gma12g00392 12 3200985 3204911 ECH
Gma11g01079 11 9109946 9114315 Gma12g00392 12 3200985 3204911 ECH
Gma12g00392 12 3200985 3204911 Gma11g01079 11 9109946 9114315 GST