Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00385 ATGGTTATCAACGATCGTGTGACTGAAAGATCCAAGGGATTTGGATTTGTTACCTTCGCCTCTGAGGATTTAATGAGAGATGCGATTGAAGGAATGAACAAGCAGAACCTTGATGGACGTAACgtggtgacggTGGAGGATACCGTGGTCGTCGGAAGCGTGGATATAACTGTAATGGTGGTGGTTTTGATGGTGAAAGAGACTATTGTTACGGACCTTACAGTAACAGTGGATCATGCTATTCCCGTGATGTTCACCAGCTATAAAACAATCGCTTGGGATGTTGAGTACCGTTGCTTTGTCGGTGGGCTCGCTTGGGCCACTGACGACCATGCCCTCGAGAGAGCCTTCTCTCAGTACGGCGAAATCGTTGAAACGAAGATTATCAACGATCGTGAGACTGGCAGATCCAGGGGTTTTGGATTTGTGACCTTCGCCTCGGAGCAGTCCATGAAAGATGCGATCGGAGCGATGAATGGACAGAACTTGGACGGCCGTAACATCACTGTCAATGAAGCTCAGTCCCGCGGTGGCGGCGGCGGCggcggaggaggaggatacaatcgtggtggcggtggatatggtggtcgtagtggcggtggcggtggtggataccgtagccgtgacggtggttatggcggtggctatggtggtggtggtggtggtggttatggcggtggcagagaccgtggttactctcgtggtggtgatggtggtgatggaggcTGGAGAAACTAA 738 0.3645 MVINDRVTERSKGFGFVTFASEDLMRDAIEGMNKQNLDGRNVVTVEDTVVVGSVDITVMVVVLMVKETIVTDLTVTVDHAIPVMFTSYKTIAWDVEYRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKDAIGAMNGQNLDGRNITVNEAQSRGGGGGGGGGGYNRGGGGYGGRSGGGGGGYRSRDGGYGGGYGGGGGGGYGGGRDRGYSRGGDGGDGGWRN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00385 245 PANTHER GEO13361P1-RELATED 2 46 - -
Gma12g00385 245 SUPERFAMILY RNA-binding domain, RBD 2 43 IPR035979 GO:0003676
Gma12g00385 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 42 IPR000504 GO:0003723
Gma12g00385 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 168 IPR000504 GO:0003723
Gma12g00385 245 PANTHER GEO13361P1-RELATED 93 243 - -
Gma12g00385 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 175 IPR000504 GO:0003723
Gma12g00385 245 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 93 243 - -
Gma12g00385 245 Gene3D - 86 194 IPR012677 -
Gma12g00385 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 42 IPR000504 GO:0003723
Gma12g00385 245 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 46 - -
Gma12g00385 245 MobiDBLite consensus disorder prediction 198 245 - -
Gma12g00385 245 SMART rrm1_1 98 171 IPR000504 GO:0003723
Gma12g00385 245 SUPERFAMILY RNA-binding domain, RBD 97 204 IPR035979 GO:0003676
Gma12g00385 245 Gene3D - 1 51 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00385 Gma-Chr12 3164854 3169245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00385 10 177 Eukaryotic Initiation Factors Gene Family AT2G23350 28.571 1.63e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00385 - K13195 gmx:547560 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00385 12 3164854 3169245 Gma12g00385 12 3164854 3169245 ECH
Gma12g00385 12 3164854 3169245 Gma11g01071 11 9059640 9062759 GST