Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00382 ATGTTGCATTGTCTCAACACTTCCTGTTCGGACATCACAGTCTTGGAAAGACAACGGGAAGCAACCATCAAGTGCCAGAACCACCAACCACCCTACTTAACGGACTTTAACGCCGTCTTCCcttcttcttcttcttcttcttcttcttcctcttcttcttctCATAGTCAGGGCTTGCTCATGATGTGCTCGGATTCCTCGCTCGGCCAGGTCCTAACTCACTCCGTCAAACCCGATCCGGGCGTCTGGCCCGAATTCGGTTTTCTACCCGCCATTTCGAGAACTTGTAGCAGAGACGGAGACTTGGTTTCGCCCAAGGAAAACATGGCCAGTGGGAAAGAAAATGCTAAGAAGAGAAAGCCTCAGAACTCCAAGGTTGTTGCGGAGATTGATAATAACAAGGACAAGGACAAGAGAGTCAAAGTAACTGGCGAGGAAGGAGAATCCAAAGTAACCGAGCACCATACCAGAAACAAGAATGCCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGACACTTCCAAAGGCTCCGAGGTTCAAAATCAGAAACCAGACTACATTCATGTCCGAGCGCGTCGTGGACAAGCCACGGATAGTCATAGCTTAGCTGAAAGAGTAAGGAGGGAGAAGATTAGCGAGAGAATGAAGTATTTGCAAGATTTAATACCGGGTTGCAACAAAGTTGCAGGGAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAACGCCAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAACCCAAGGCTTGACTTCAACATTGACGAACTGTTTGCCAAAGAGGTGTTTCCTTCTTGTGCTCAAAGTTTTCCAAACATAGGGATTCCCTCAGATATGAGTATTAGTAACAACCCTTCGTATCTTCAGTTCAATTCAGCGCAGCAACTTGTATCGTGCTGTGGTGGATTAATAAACAGCATGGGAATAAGCCCTCCCAACATGGGACTCCGAACGAACATTATTAGTACTAGCACTGTACCTTTGCCCGAAACTTTTCTTGACTCTTCCTGTTTCGCTCAAATTCTACCCTCCTCAAATTGGGAAGGTGGTGATTTCCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGCGAACAGCATCTTTTCCCCCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATCTAAAAATGGAGATGTAA 1209 0.4392 MLHCLNTSCSDITVLERQREATIKCQNHQPPYLTDFNAVFPSSSSSSSSSSSSSHSQGLLMMCSDSSLGQVLTHSVKPDPGVWPEFGFLPAISRTCSRDGDLVSPKENMASGKENAKKRKPQNSKVVAEIDNNKDKDKRVKVTGEEGESKVTEHHTRNKNAKSNANKNNRETSADTSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLIPGCNKVAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFPSCAQSFPNIGIPSDMSISNNPSYLQFNSAQQLVSCCGGLINSMGISPPNMGLRTNIISTSTVPLPETFLDSSCFAQILPSSNWEGGDFQSLYNVAFDQGRTASFPPQPFTGLVEASNLKMEM 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00382 402 Pfam Helix-loop-helix DNA-binding domain 202 249 IPR011598 GO:0046983
Gma12g00382 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 267 IPR036638 GO:0046983
Gma12g00382 402 MobiDBLite consensus disorder prediction 162 184 - -
Gma12g00382 402 Gene3D - 195 269 IPR036638 GO:0046983
Gma12g00382 402 CDD bHLH_AtBPE_like 188 273 - -
Gma12g00382 402 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 103 383 IPR024097 GO:0006355
Gma12g00382 402 MobiDBLite consensus disorder prediction 111 160 - -
Gma12g00382 402 MobiDBLite consensus disorder prediction 97 189 - -
Gma12g00382 402 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 103 383 - -
Gma12g00382 402 SMART finulus 204 254 IPR011598 GO:0046983
Gma12g00382 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 248 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00382 Gma-Chr12 3133059 3135695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00382 89 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 47.287 8.77e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g00382 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00382 - - gmx:100815751 777.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00382 12 3133059 3135695 Gma12g00382 12 3133059 3135695 ECH
Gma12g00382 12 3133059 3135695 Gma11g00612 11 5086716 5088758 ECH
Gma12g00382 12 3133059 3135695 Gma11g01067 11 9028378 9031270 GST