Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00360 ATGCAGGAGAAGATGACAAAGAATGAGTTATTATCAGCAGTGGTGAAATCTCTAACAAGAGACACTGAAGAGAGGAGGGAATCAGTGGGACTGTTGCTAGAACTCTCTGACCTTCCTGCAGTTAGACGGAAGATTGGAAGAATTCAGGGGTGTATTGTTATGTTAGTTTCTATCCTTAATGGAGTTGATCCTGTTGCTTCACGTGATGCAGCAAAGTTGTTGGATATATTATCAAATAATACTCAGAATGCACTTCTTATGGCTGAGGCTGGTTACTTTGGGCCACTAGTGCAGTATTTGAATAAAGGTTCTGACATGACCAAGATCCTCATGGCAACAACACTTTCTAGGCTGGTGCTCACTGATCATAGCAAACTTACCCTTGGACAAGATGGGGCAATTGAGCCCCTTGTGAGAATGTTCAATTCTGGAAAACTTGAGTCCAAGTTATCAGCTCTAAATGCACTGCAAAATCTTTCCAGCTTGACAGAAAATGTGGAACGCTTGGTCAAAACTGGAATTGTAGGATCTTTGCTACAACTTCTTTTCTCGGTAACATCTGTGCTCATGACTCTACGGGAGCCTGCATCAGTTATCCTTGCAAGAATTGCTGAGTCAGAAACTGTTCTTGTCAATAAAGGTGTCGCTCAGCAGATGCTCTCACTTTTGAATCTTTCCAGCCCTGTGATTCAAGGTCATCTATTAGAAGCTCTAAATAGCATTGCTTCCCATCCTTGTGCCTCCAAAGTGAGAAGCAAAATGAAGGACAAAGGTGCACTTCAGCTAATTTTACCCCTTCTGAAGGAAACAAAAATGAAAATAAGGAGCAAGGCATTGAATTTGCTATATACTCTCTCCGAAGATCTAACAGATGAGTTGACAGCACATTTTGATGAAACGCATCTTTTTGACATTGTTAACATTGTCTTATCATCAACATCAGATAGCGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAGTGATAAAAAAGTGACAGATGTACTGAAGAGAGCGAATTTGTTGCCCGTTTTGGTATCCATTATGGATTCAGGCACGAGAAGTAACTCACCAGCAAAAAGTATCTTAATGGAGAGTATTGCAGGCGTTGCAATCCGGTTCACAAGCTCCTCCGACAAGAAATTGCAACTTCTTTCAGCACAACATGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGTGGTTCAGCAATCACAAAATTCAAAGCCGCAACCGCTCTTGCTCAACTATCACAGAATTCTCCGTCTCTTAGGCGGTCTAGGAAGTCGAGGTGGTTGTGTGTTGCTCCCTCAGTGAATGCATATTGTGAAGTTCATGATGGTTATTGCTTTGTTAGCAGCACATTTTGTCTGATCAAGGCAGGAGCTGTTTCTCCCCTTATCCAAATATTGGAAGATAAGGATTGGGAAGCAGTGGAAGCTGCTCTGAATGCCCTTTCAACTCTATTGCAAGATGAAATCTGGGAAGGTGGTGCCAATTACATAGCCAAATTGTCAGGTGTAGAAGCTATTGTAAATGTATTAGAAGCAGGTGATGTGAAGGTTCAAGAAAAAGCGCTATGGATGTTGGAGAGAATATTCAGGATTGAAGAACACAGAATGAAATATGCAGAATTCGCCCAGATGGTTCTTATTGATATGGCACAGAGGAGTGATTCTAGATTGAAGTCTACAGTTGCAAAAGTCTTAGCAGTGCTGGAGCTGCTACTAGTTCAATCAAGTTATTTCTGA 1761 0.4162 MQEKMTKNELLSAVVKSLTRDTEERRESVGLLLELSDLPAVRRKIGRIQGCIVMLVSILNGVDPVASRDAAKLLDILSNNTQNALLMAEAGYFGPLVQYLNKGSDMTKILMATTLSRLVLTDHSKLTLGQDGAIEPLVRMFNSGKLESKLSALNALQNLSSLTENVERLVKTGIVGSLLQLLFSVTSVLMTLREPASVILARIAESETVLVNKGVAQQMLSLLNLSSPVIQGHLLEALNSIASHPCASKVRSKMKDKGALQLILPLLKETKMKIRSKALNLLYTLSEDLTDELTAHFDETHLFDIVNIVLSSTSDSEKAAAVGILSNLPVSDKKVTDVLKRANLLPVLVSIMDSGTRSNSPAKSILMESIAGVAIRFTSSSDKKLQLLSAQHGVIPLLVKLLSSGSAITKFKAATALAQLSQNSPSLRRSRKSRWLCVAPSVNAYCEVHDGYCFVSSTFCLIKAGAVSPLIQILEDKDWEAVEAALNALSTLLQDEIWEGGANYIAKLSGVEAIVNVLEAGDVKVQEKALWMLERIFRIEEHRMKYAEFAQMVLIDMAQRSDSRLKSTVAKVLAVLELLLVQSSYF 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00360 586 SMART arm_5 454 494 IPR000225 GO:0005515
Gma12g00360 586 SMART arm_5 162 205 IPR000225 GO:0005515
Gma12g00360 586 SMART arm_5 121 161 IPR000225 GO:0005515
Gma12g00360 586 SMART arm_5 80 120 IPR000225 GO:0005515
Gma12g00360 586 SMART arm_5 498 538 IPR000225 GO:0005515
Gma12g00360 586 SMART arm_5 247 287 IPR000225 GO:0005515
Gma12g00360 586 SMART arm_5 382 422 IPR000225 GO:0005515
Gma12g00360 586 Gene3D - 369 582 IPR011989 -
Gma12g00360 586 Gene3D - 209 368 IPR011989 -
Gma12g00360 586 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 132 174 IPR000225 GO:0005515
Gma12g00360 586 Gene3D - 2 208 IPR011989 -
Gma12g00360 586 SUPERFAMILY ARM repeat 95 541 IPR016024 -
Gma12g00360 586 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN-LIKE 2 586 - -
Gma12g00360 586 Pfam Armadillo/beta-catenin-like repeat 390 421 IPR000225 GO:0005515
Gma12g00360 586 Pfam Armadillo/beta-catenin-like repeat 122 161 IPR000225 GO:0005515
Gma12g00360 586 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00360 Gma-Chr12 2952818 2956165 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00360 5 573 U-box Gene Family AT1G76390 28.922 8.62e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00360 K08332 - gmx:102659538 1079.32