LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma12g00350	ATGGCTTCCGATTCTTCTCCCCTGAATTTCAACAACGGACCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGGCAACACCTTCTCCTCGCCGGCAAGTAGACGCCGGCGCCGCTCATCCACCCCCTCCGCATTCGCCACCCCGTCGGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGAGGTGGCAGTGGAGGCGGCGGAGGGCACGTTCCCGCCACTCCGACCTCCACCACCGACGACGTGCCGGTCTCTTCGGATGGCGGCGACGGCTTCGACATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTAAAAGGTTTGTGAGGAACTTCAGAGAAGCGTCTTCGTCGCAGGGTGGTGACGATGATGACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAACTGATCAGACAGGTTATTGACGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGATGTGTTTGATCATGACCCTGATCTGTACACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATCTTTGATTTGGTCTTGATGAACATGGTTAGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACCTCAACCTCTATGAGAAATTTGAACCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGGTTATAAGAAGCAGCTCAATCATTCCAGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACTGAACCCACTATATGTTTGAGGGAAGAGTGTCAATCCAGAAACTCCATGGCACTTGTTCACAACCGATGCAGGTTTGCTGACAAGCAAATTGTGAGGGTCCAGGAGACACCTGACGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATAATGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCCAGGATGTTTGTAGAGGATGTTATGGATGTTGATGGTCAAGATAGAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCTGATATATATGAAATACTGACAAATTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGGTTAGGCATATTTCTAGTTATGCATTCATTGATTGCTTGATGAATTTTCTAAGGATGCTAGTTTATAATTGGTTGCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGTGGCGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAGTTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCCGTTGGATTGACTGCTTATGTGACCAAGGACCCCGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTCATGAACAGACTGATAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAGCAGGATGTGTTGGACATTTCTACATTAACCGATTATGTTAGCTATGCCCGAAGGCACATACACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACACCGAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTCGAAAAACATGATGTAATGGAGGCTTTTCGGCTTTTGGAAGTTGCGATGCAGCAGTCTGCAACGGATCATTCTACTGGTAGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGCGAAAGGATGAGACGAGAAAGTTTGCAACAAGCTACTCGTAACATAATCATGGAGAAAATGCAGATTGGGGGACAATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGCGATGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTCGCTGCAGAAGGATTTGTTACCATGCACGGTGACAGTGTAAAAAGATCTTGA	2601	0.4617	MASDSSPLNFNNGPSSPDDSLSSPIGNTFSSPASRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRGGSGGGGGHVPATPTSTTDDVPVSSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFVRNFREASSSQGGDDDDGLHLHTEGKYEKLIRQVIDVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSELKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRSSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLREECQSRNSMALVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDNAKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMFVEDVMDVDGQDRNAEVLFDEEKVAQLKELSKRPDIYEILTNSLAPNIWELDDVKKGLLCQVRHISSYAFIDCLMNFLRMLVYNWLQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKAHEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARRHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGRTIDMDLITTGVSASERMRRESLQQATRNIIMEKMQIGGQSMRLLELLEELKKQDTGSDVHLNDLRNAIATLAAEGFVTMHGDSVKRS	866

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma12g00350	866	Gene3D	-	413	774	IPR027417	-
	Gma12g00350	866	ProSiteProfiles	MCM family domain profile.	429	661	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Gma12g00350	866	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	479	865	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Gma12g00350	866	MobiDBLite	consensus disorder prediction	1	69	-	-
	Gma12g00350	866	Pfam	MCM OB domain	232	361	IPR033762	-
	Gma12g00350	866	PANTHER	DNA REPLICATION LICENSING FACTOR MCM4	81	455	IPR008047	GO:0003677\|GO:0003678\|GO:0005524\|GO:0006270\|GO:0042555
	Gma12g00350	866	Pfam	MCM N-terminal domain	125	228	IPR027925	-
	Gma12g00350	866	Gene3D	-	259	311	-	-
	Gma12g00350	866	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	496	775	IPR027417	-
	Gma12g00350	866	Pfam	MCM P-loop domain	479	665	IPR001208	GO:0003677\|GO:0005524\|GO:0032508

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma12g00350	Gma-Chr12	2886470	2891736	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma12g00350	1	865	Core DNA Replication Machinery Family	AT2G16440	72.645	0.0	1241

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma12g00350	K02212		-	gmx:100805788	1557.73

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma12g00350	12	2886470	2891736	Gma12g00350	12	2886470	2891736	ECH
	Gma12g00350	12	2886470	2891736	Gma11g01037	11	8788832	8794003	GST

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