Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00350 ATGGCTTCCGATTCTTCTCCCCTGAATTTCAACAACGGACCTTCATCCCCCGACGACTCCCTTTCCAGCCCTATCGGCAACACCTTCTCCTCGCCGGCAAGTAGACGCCGGCGCCGCTCATCCACCCCCTCCGCATTCGCCACCCCGTCGGAGCGCCGCTCCCGATTCGCCTCCTCCGATGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGAGGTGGCAGTGGAGGCGGCGGAGGGCACGTTCCCGCCACTCCGACCTCCACCACCGACGACGTGCCGGTCTCTTCGGATGGCGGCGACGGCTTCGACATGGACGATGCCAGGCCCACCTTCGTGTGGGGCACCAACATAAGCGTGGAAGACGTGAACGACGCGATTAAAAGGTTTGTGAGGAACTTCAGAGAAGCGTCTTCGTCGCAGGGTGGTGACGATGATGACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAACTGATCAGACAGGTTATTGACGTTGAAGGAGATTCTCTTGATGTTGATGCGCGTGATGTGTTTGATCATGACCCTGATCTGTACACTAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCCATCTTTGATTTGGTCTTGATGAACATGGTTAGCGAATTGAAGCCTATGTTCGAGAAGCACATTCAGACCCGTATTTTCAATCTCAGAACCTCAACCTCTATGAGAAATTTGAACCCATCTGATATTGAGAGGATGGTATCATTGAAGGGAATGGTTATAAGAAGCAGCTCAATCATTCCAGAGATTAGGGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCTCTGAGCCAGTTCCTGTGGAGAGAGGGCGAATAACTGAACCCACTATATGTTTGAGGGAAGAGTGTCAATCCAGAAACTCCATGGCACTTGTTCACAACCGATGCAGGTTTGCTGACAAGCAAATTGTGAGGGTCCAGGAGACACCTGACGAGATTCCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGTTGGTGGATAATGCAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGGGCTATGAGTGTCAGGGTTGGACCAACACAGAGAACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACTGATAAGTCCAGGATGTTTGTAGAGGATGTTATGGATGTTGATGGTCAAGATAGAAATGCAGAAGTTCTCTTTGATGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACGGCCTGATATATATGAAATACTGACAAATTCATTGGCTCCAAACATCTGGGAGCTAGATGATGTGAAAAAAGGTCTTCTTTGTCAGGTTAGGCATATTTCTAGTTATGCATTCATTGATTGCTTGATGAATTTTCTAAGGATGCTAGTTTATAATTGGTTGCAGCTTTTTGGTGGCAATGCTTTGAAGTTAGCTTCTGGTGCTAACTTTCGTGGCGATATAAATATTCTTCTCGTTGGTGATCCTGGGACAAGCAAGTCCCAGTTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGAAGTTCAGCCGTTGGATTGACTGCTTATGTGACCAAGGACCCCGAAACAGGAGAAACTGTTTTAGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATATGTTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATTATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCAAGATATAATCCTCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGATTTGATTTAATCTACTTGATGCTTGACAAGGCTCATGAACAGACTGATAGGCGCCTTGCCAAACATATTGTGTCCCTACACTTTGAGAATCCCGAGAACGTGGAGCAGGATGTGTTGGACATTTCTACATTAACCGATTATGTTAGCTATGCCCGAAGGCACATACACCCACAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTAGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACACCGAGGCAGATTGAGAGTCTGATACGCCTAAGTGAAGCATTGGCTCGGATGCGCTTCTCAGAATGGGTCGAAAAACATGATGTAATGGAGGCTTTTCGGCTTTTGGAAGTTGCGATGCAGCAGTCTGCAACGGATCATTCTACTGGTAGAACTATTGACATGGATCTTATTACTACTGGAGTTTCGGCAAGCGAAAGGATGAGACGAGAAAGTTTGCAACAAGCTACTCGTAACATAATCATGGAGAAAATGCAGATTGGGGGACAATCTATGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAGGATACTGGTAGCGATGTTCATCTTAATGATCTAAGGAATGCAATTGCTACTCTCGCTGCAGAAGGATTTGTTACCATGCACGGTGACAGTGTAAAAAGATCTTGA 2601 0.4617 MASDSSPLNFNNGPSSPDDSLSSPIGNTFSSPASRRRRRSSTPSAFATPSERRSRFASSDATPTAPRSRQRGGSGGGGGHVPATPTSTTDDVPVSSDGGDGFDMDDARPTFVWGTNISVEDVNDAIKRFVRNFREASSSQGGDDDDGLHLHTEGKYEKLIRQVIDVEGDSLDVDARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSELKPMFEKHIQTRIFNLRTSTSMRNLNPSDIERMVSLKGMVIRSSSIIPEIREAIFRCLVCGFCSEPVPVERGRITEPTICLREECQSRNSMALVHNRCRFADKQIVRVQETPDEIPEGGTPHTVSLLMHDKLVDNAKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMFVEDVMDVDGQDRNAEVLFDEEKVAQLKELSKRPDIYEILTNSLAPNIWELDDVKKGLLCQVRHISSYAFIDCLMNFLRMLVYNWLQLFGGNALKLASGANFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVTKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKAHEQTDRRLAKHIVSLHFENPENVEQDVLDISTLTDYVSYARRHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARMRFSEWVEKHDVMEAFRLLEVAMQQSATDHSTGRTIDMDLITTGVSASERMRRESLQQATRNIIMEKMQIGGQSMRLLELLEELKKQDTGSDVHLNDLRNAIATLAAEGFVTMHGDSVKRS 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00350 866 Gene3D - 413 774 IPR027417 -
Gma12g00350 866 ProSiteProfiles MCM family domain profile. 429 661 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 479 865 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 MobiDBLite consensus disorder prediction 1 69 - -
Gma12g00350 866 Pfam MCM OB domain 232 361 IPR033762 -
Gma12g00350 866 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 81 455 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 Pfam MCM N-terminal domain 125 228 IPR027925 -
Gma12g00350 866 Gene3D - 259 311 - -
Gma12g00350 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 775 IPR027417 -
Gma12g00350 866 Pfam MCM P-loop domain 479 665 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 Pfam MCM P-loop domain 417 455 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 SUPERFAMILY Nucleic acid-binding proteins 151 382 IPR012340 -
Gma12g00350 866 CDD MCM4 432 767 - -
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 254 267 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 617 634 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 769 778 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 445 456 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 305 317 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 Gene3D - 116 227 - -
Gma12g00350 866 Pfam MCM AAA-lid domain 681 767 IPR041562 -
Gma12g00350 866 PANTHER DNA REPLICATION LICENSING FACTOR MCM4 479 865 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Gma12g00350 866 SMART mcm 228 769 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 ProSitePatterns MCM family signature. 564 572 IPR018525 GO:0003677|GO:0005524|GO:0006260
Gma12g00350 866 Gene3D - 232 371 IPR012340 -
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein family signature 584 597 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein family signature 635 643 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein family signature 608 620 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 511 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 PRINTS Mini-chromosome maintenance (MCM) protein family signature 556 570 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gma12g00350 866 MobiDBLite consensus disorder prediction 1 103 - -
Gma12g00350 866 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 81 455 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00350 Gma-Chr12 2886470 2891736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00350 1 865 Core DNA Replication Machinery Family AT2G16440 72.645 0.0 1241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00350 K02212 - gmx:100805788 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00350 12 2886470 2891736 Gma12g00350 12 2886470 2891736 ECH
Gma12g00350 12 2886470 2891736 Gma11g01037 11 8788832 8794003 GST