Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00335 ATGGAAGTTGCGGCAGCGAAAGCCCTGAAACCAAGCCTTCGGACAGAGTTCATTTTCCCTCAAGCAATTTACGACGAGATTTTGTGTTTTAACGCCAACAACGTTGTTGCCGGCGAAGATTTCTCCGTGGACGACCTACTCGACTTCTCCAACGGCGAATTTCAAGTCGGGAAAGATTTCGATGACTACGAGGAAGACGAAGACGAAGAAAAAGGCAGCACCTCCGGTTCCTTGCAGTCGCAGGACAGAACCGAAGACGACAGCAACTCTAATTCCACCGCCGGAGGCGGCGGAGACTCCGTTTTCGCCGGCGAGTTGTCAGTTCCGGCGGATGACGTGGCAGACTTGGAATGGGTTTCTCACTTTGTGGACGATTCTCTCCCGGAGTTATCTCTATTGTACCCAGTCCGTTGTTCCGAGCAAACAAGGGTATGTACCGAACCGGAACCCAGACCGGGCTCGGTCCAAACCATTCCAGCAGTTCCAAGAAAGCCGAGAACCGGAAAGACTAGAAAGCCCAACGCTCGTGTCTGGTCCTCGATGTCGTCTTTGTGTTCTTCGGTGACGGCCAAGAAACAGAAGAAAAAGGTCGAGGCCCAAAACGGTGGGGCCCAGTCTCTGCGACGGTGCAGCCACTGCCAGGTGCAAAAAACGCCACAGTGGAGAACCGGCCCACTAGGGCCCAAAACACTTTGCAACGCTTGTGGAGTTCGGTTCAAGTCCGGTCGACTTTTTCCAGAGTATAGACCAGCCTGTAGCCCAACTTTTTCTGACGATATTCACTCCAACAGCCATCGTAAAGTGTTGGAGATGAGACGAAAAAAGGAGATAGTTGAATCGGACCGGATTCAATTGATCCCAAGTTGTTAA 870 0.5195 MEVAAAKALKPSLRTEFIFPQAIYDEILCFNANNVVAGEDFSVDDLLDFSNGEFQVGKDFDDYEEDEDEEKGSTSGSLQSQDRTEDDSNSNSTAGGGGDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVRCSEQTRVCTEPEPRPGSVQTIPAVPRKPRTGKTRKPNARVWSSMSSLCSSVTAKKQKKKVEAQNGGAQSLRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSDDIHSNSHRKVLEMRRKKEIVESDRIQLIPSC 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00335 289 ProSitePatterns GATA-type zinc finger domain. 210 235 IPR000679 GO:0006355|GO:0043565
Gma12g00335 289 Gene3D - 200 282 IPR013088 GO:0006355|GO:0008270
Gma12g00335 289 PANTHER GATA TRANSCRIPTION FACTOR 188 288 - -
Gma12g00335 289 PANTHER GATA TRANSCRIPTION FACTOR 1 188 - -
Gma12g00335 289 SMART GATA_3 204 258 IPR000679 GO:0006355|GO:0043565
Gma12g00335 289 ProSiteProfiles GATA-type zinc finger domain profile. 204 240 IPR000679 GO:0006355|GO:0043565
Gma12g00335 289 MobiDBLite consensus disorder prediction 74 97 - -
Gma12g00335 289 Pfam GATA zinc finger 210 243 IPR000679 GO:0006355|GO:0043565
Gma12g00335 289 PANTHER GATA TRANSCRIPTION FACTOR 1 188 - -
Gma12g00335 289 PANTHER GATA TRANSCRIPTION FACTOR 188 288 - -
Gma12g00335 289 CDD ZnF_GATA 209 266 IPR000679 GO:0006355|GO:0043565
Gma12g00335 289 MobiDBLite consensus disorder prediction 63 104 - -
Gma12g00335 289 PIRSF Txn_fac_GATA_plant 1 286 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gma12g00335 289 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 266 - -
Gma12g00335 289 MobiDBLite consensus disorder prediction 145 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00335 Gma-Chr12 2771743 2773360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00335 40 275 C2C2-Gata Transcription Factor Family AT4G36240 47.600 2.42e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma12g00335 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00335 - - gmx:100776188 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00335 12 2771743 2773360 Gma12g00335 12 2771743 2773360 ECH
Gma11g01021 11 8649638 8659299 Gma12g00335 12 2771743 2773360 ECH
Gma12g00335 12 2771743 2773360 Gma11g01021 11 8649638 8659299 GST