Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00327 ATGGCTCCATTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATTATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGTCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCTCTTGCCCTGTATGGACTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTTCAACACTGCGTACCAAATTCCGAATGGAAATGTGTGGAGCCACAGCACTGACATGGTCCCATACCATCTGTCCGTCGCTTCACCTTCCTCGATCCGTCTCTACCAGGGAGGCTAGGAGCTTCTGTGTTTGGTGTGTCTCTGATCAAGACCCCAAGGGAAATAAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATTGGTAGAAGGTTGGTGCAAAGATTGCATGCAGACAATCACAGTGTTCATGTCTTGACACGATCTAAATCTAAAGCAGAAACAATTTTTCCAGCAAAAGACTTTCCAGGAATCAAGATAGCAGAAGAGCCAGAATGGAAAGATAGCGTTCAGGGCTCAACAGGGGTTGTGAATTTGGCTGGACTGCCCATAAGTACCCGGTGGTCTCCTGAGATAAAGAAGGAAATCAAGCAAAGCAGGATTCGAGTGACCTCAAAGGTTGCAGAATTGATAAACAGTGCACCAGATGATATTCGACCTAAAGTTTTTGTTAGTGCAACAGCTGTTGGTTATTATGGCACCAGTGAGACACAAGTCTTTGATGAACAAAGTCCATCAGGAAAGGATTACTTGGCTGAGGTTTGCAGGGAATGGGAATCCACAGCCCTAAAGGTAAATGGAGATGTTAGAGTGGCTCTAATTCGCATTGGTGTTGTTCTTGGTAAAGATGGTGGAGCATTAGTTAAAATGATACCTATCTTCAACTTGTTTGCTGGTGGACCTCTAGGCTCTGGAAAACAATGGTTCTCCTGGATTCATTTGGAAGACATTGTCAATTTAATATATGAAGCACTATCAAATCCATCTTACAAAGGTGTTATCAATGGAACTGCACCAAATCCTGTGCGATTGGCAGAATTGTGTGACCAGCTGGGAAATGTCTTGGGTCGTCCCTCATGGCTGCCAGTACCGGACTTTGCGCTCAAGGCTGTCCTTGGAGAAGGTGCTACTGTGGTTTTAGAAGGGCAGAGAGTGCTTCCTATTCAAGCTAAGAAGTTGGGTTTCCCATTCAAATATCCTTACGTGAAGGATGCCCTTCAAGCAATTCTTTCTTGA 1551 0.4597 MAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGSTLRTKFRMEMCGATALTWSHTICPSLHLPRSVSTREARSFCVWCVSDQDPKGNKMIISVTGATGFIGRRLVQRLHADNHSVHVLTRSKSKAETIFPAKDFPGIKIAEEPEWKDSVQGSTGVVNLAGLPISTRWSPEIKKEIKQSRIRVTSKVAELINSAPDDIRPKVFVSATAVGYYGTSETQVFDEQSPSGKDYLAEVCREWESTALKVNGDVRVALIRIGVVLGKDGGALVKMIPIFNLFAGGPLGSGKQWFSWIHLEDIVNLIYEALSNPSYKGVINGTAPNPVRLAELCDQLGNVLGRPSWLPVPDFALKAVLGEGATVVLEGQRVLPIQAKKLGFPFKYPYVKDALQAILS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00327 516 Gene3D - 211 505 - -
Gma12g00327 516 PANTHER SUGAR NUCLEOTIDE EPIMERASE RELATED 195 515 - -
Gma12g00327 516 SUPERFAMILY F1F0 ATP synthase subunit C 13 76 IPR035921 -
Gma12g00327 516 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 213 476 IPR036291 -
Gma12g00327 516 TIGRFAM yfcH: TIGR01777 family protein 217 511 IPR010099 -
Gma12g00327 516 CDD ATP-synt_Vo_c_ATP6C_rpt2 88 155 - -
Gma12g00327 516 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 79 - -
Gma12g00327 516 CDD SDR_a8 217 515 - -
Gma12g00327 516 SUPERFAMILY F1F0 ATP synthase subunit C 86 155 IPR035921 -
Gma12g00327 516 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 12 120 IPR011555 GO:0033179|GO:0046961|GO:1902600
Gma12g00327 516 Gene3D - 10 161 IPR035921 -
Gma12g00327 516 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma12g00327 516 PRINTS Vacuolar ATP synthase 16kDa subunit signature 106 132 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma12g00327 516 PRINTS Vacuolar ATP synthase 16kDa subunit signature 133 156 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma12g00327 516 PRINTS Vacuolar ATP synthase 16kDa subunit signature 55 79 IPR000245 GO:0033179|GO:0046961|GO:1902600
Gma12g00327 516 Pfam Domain of unknown function (DUF1731) 468 514 IPR013549 -
Gma12g00327 516 Pfam NAD dependent epimerase/dehydratase family 217 434 IPR001509 -
Gma12g00327 516 Pfam ATP synthase subunit C 16 75 IPR002379 GO:0015078|GO:0033177|GO:1902600
Gma12g00327 516 Pfam ATP synthase subunit C 96 154 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00327 Gma-Chr12 2710582 2718918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00327 1 161 Primary Pumps ATPases(2) AT2G16510 97.516 1.57e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00327 K07071 - gmx:100814881 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00327 12 2710582 2718918 Gma12g00327 12 2710582 2718918 ECH