Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00310 ATGACTGTTGAAAAGAGAATTGTTTTGGTTGGGATTAGAATTGATGGCTATAGCAGACAGCTCCTCAACTGGGCACTTGCCAAAGTTGCTGAGCCTGGGGATTGTGTTATAGCAGTTCATGTTGTTAAAAGTTCGGATTATGTTTCCAAAAACAAGACTCTGATAGATGGCTATTTAGAAGTTTATGAAGGCCTATGTGGTGTGAAGAAGGTAGGTCTCACCGGTCAAATCTTCACAGGAAGCTCCATTAAAAACATTCTTGTTAGAGAAGCTAAAAAGCATGCTGCCCTGGCTCTAGTGGTAGGGGGTCGAGCTGCCACAGCTAAATATTGTGCTAAACGTCTACAACCCACCACCAATGTTCTAGCCATTCAAGACTCAAGAATTGTCTTCAGAAGTTGCACCAATAAACAACTACCAGGTGGTCTTATACTGGATCCAAGACCAAGTTTAACAATCATAAAAGAAAATTTGCGTGACAGAGCAATCCACTCTTCAATTTGTGACTCCATCGTGGAGATTGAGGAATCAACGCGCAAAAATTCCTTAGAATCGAAGGAAGAAGCGTTTAATGGATCAGAAAAGAGCAAGTCAAGGTCAATATCCATGTTTGCAGGTGATTCTGCCGAACAGAAGCTTGGATGGCCTCTACTCCGCAGAGCCAATTCAGGAATGTCACAAACCCTTCATGCAAGGGACATGTCAGTAGTACAATGGGTTATGACCTTACCAGATCGTTCACCAAATAAAGGTTCTAGCTCTTCTTCCACTGAGGAAAATCCATTTGAAAGGAGCATCAGCGATGTTGAATATGAGAGCTCTTCAAATTCCTCTCCTTCATCTGTTGATATACCAAATGGCCTGGAAGAGATGTTAAATTTAAATTCTCTAAATTGCAAGCGGTTCAGCCTTGAGGTTCTGAAGTCTTGCACTAGCCAATTCTCTTCAGAAAAATTGGTTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTCCTCACTGATGGAAAATCAATCGCAGTTAAAGTAATGCAGTCATCAAAAGAAGCATGGAAAGATTTTGCCCTTGAGGTGGAAATAATATCCTCATTGGAGCACAAAAGCATTGCCCCTTTACTTGGGATTTGCATAGAGAACAATACTTTAATATCTGTTTATGACTATTTCCCCAATGGCAGCTTAGAGGAAAATCTGCATGGAAAGAACAAGGATGAATCCATCTTGTCATGGGAAGTAAGATTTAATGTGGCTATTAGGATCGCTGAGGCCCTTGATTACCTACACAGGGAAGCTTTGAAGCCTGTCATACATAAAGATGTCAAGTCGTCTAACATTCTTCTCTCCCAAGGGTTTGAACCTCAGTTGtctgattttggactagcagtatggggaccaacaacttcatcctttttgacccaagatgtagttggaacatttggttaccttgctcctgaatacttcatgtatggaaaggtcagtgacaagatagatgtctatgccttcggtgtagttttacttgaactaatatcaggaagggaaccTATCAACTCGGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATAATAGAGAGTGGGAATGTTAAGGGCTTATTGGACCCAAATTTAGAAGGGAAATTTGATGAGGCCCAATTGCAAAGAATGGTTTTGGCAGCATCTTTATGCATCACACGGGCTGCTAGACTTCGTCCTAAACTGAGCCAGATACTGAAGATCCTAAAAGGAGAAGAGAAAGTTGAATATTTCTTAAACTCTCAAGGAGATAATGATCAGGAGGATTCAGAAAATCAAGAAAACATTGATGACGAAGTGTATCCAAATTCAAGTGCAGAGTTACACCTAAGTCTTGCATTACTTGGTGTTGACGATGACAGTACATCACATAGTAGCACAGACCACAGCTATAGTGAAGACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTTAATTAG 1986 0.3766 MTVEKRIVLVGIRIDGYSRQLLNWALAKVAEPGDCVIAVHVVKSSDYVSKNKTLIDGYLEVYEGLCGVKKVGLTGQIFTGSSIKNILVREAKKHAALALVVGGRAATAKYCAKRLQPTTNVLAIQDSRIVFRSCTNKQLPGGLILDPRPSLTIIKENLRDRAIHSSICDSIVEIEESTRKNSLESKEEAFNGSEKSKSRSISMFAGDSAEQKLGWPLLRRANSGMSQTLHARDMSVVQWVMTLPDRSPNKGSSSSSTEENPFERSISDVEYESSSNSSPSSVDIPNGLEEMLNLNSLNCKRFSLEVLKSCTSQFSSEKLVGKGGSNRVYKGVLTDGKSIAVKVMQSSKEAWKDFALEVEIISSLEHKSIAPLLGICIENNTLISVYDYFPNGSLEENLHGKNKDESILSWEVRFNVAIRIAEALDYLHREALKPVIHKDVKSSNILLSQGFEPQLSDFGLAVWGPTTSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPINSAACKGQESLVVWAKPIIESGNVKGLLDPNLEGKFDEAQLQRMVLAASLCITRAARLRPKLSQILKILKGEEKVEYFLNSQGDNDQEDSENQENIDDEVYPNSSAELHLSLALLGVDDDSTSHSSTDHSYSEDLKEQWSRSSSFN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00310 661 MobiDBLite consensus disorder prediction 634 661 - -
Gma12g00310 661 Gene3D Phosphorylase Kinase; domain 1 281 388 - -
Gma12g00310 661 Gene3D Transferase(Phosphotransferase) domain 1 389 600 - -
Gma12g00310 661 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Gma12g00310 661 ProSiteProfiles Protein kinase domain profile. 314 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00310 661 SMART serkin_6 314 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00310 661 MobiDBLite consensus disorder prediction 637 651 - -
Gma12g00310 661 PANTHER OS08G0249100 PROTEIN 3 642 - -
Gma12g00310 661 MobiDBLite consensus disorder prediction 244 284 - -
Gma12g00310 661 MobiDBLite consensus disorder prediction 182 203 - -
Gma12g00310 661 MobiDBLite consensus disorder prediction 245 284 - -
Gma12g00310 661 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 3 642 - -
Gma12g00310 661 CDD USP_Like 8 104 - -
Gma12g00310 661 Pfam Protein kinase domain 315 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00310 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00310 Gma-Chr12 2516327 2519945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00310 301 659 Trihelix Transcription Factor Family AT1G70460 39.011 5.78e-74 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gma12g00310 Pkinase 3.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00310 - - gmx:100789189 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00310 12 2516327 2519945 Gma12g00310 12 2516327 2519945 ECH
Gma12g00310 12 2516327 2519945 Gma11g00983 11 8361649 8365057 GST