Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00303 ATGGGAAGGTCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGACAGACTCATATCTTATATTCGAGCTCACGGAGAAGGCTGCTGGCGTTCACTCCCCAAAGCCGCCGGCCTTCTCCGGTGCGGCAAGAGCTGCCGTCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAAAGAGGTAACTTTACCGAAGAAGAAGATGAACTCATCATCAAACTCCACAGTCTCCTCGGTAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAAATAAAGAATTATTGGAACACGCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCTACTCATAGGCCACTCAACGAAGCTGCTTCTGCTGCAACTGTTACAACTGCCACCACTAATATATCTTTTGGGAAACAACAAGAACAAGAGACAAGTTCTAGTAACGGAAGCGTTGTTAAAGGTTCCATCTTGGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCAACAACAACCTCAGAAGAATCTTTGTTTTGTTTGCAGTTTGGGTTTGAACAACAGCAAGGATTGTAGCTGCAACGTTGCCAACACTGTTACTGTTACTGTCAGCAACACTACTCCTTCTTctgctgctgctgctgctgctgctgctTATGATTTCTTGGGCATGAAAACCAACGGTGTTTGGGATTGCACCCGCTTGGAAATGAAATGA 762 0.4475 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASAATVTTATTNISFGKQQEQETSSSNGSVVKGSILERCPDLNLELTISPPRQQQPQKNLCFVCSLGLNNSKDCSCNVANTVTVTVSNTTPSSAAAAAAAAYDFLGMKTNGVWDCTRLEMK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00303 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma12g00303 253 CDD SANT 69 112 IPR001005 -
Gma12g00303 253 Gene3D - 14 66 - -
Gma12g00303 253 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 213 - -
Gma12g00303 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma12g00303 253 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gma12g00303 253 CDD SANT 16 61 IPR001005 -
Gma12g00303 253 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Gma12g00303 253 SMART sant 66 114 IPR001005 -
Gma12g00303 253 SMART sant 13 63 IPR001005 -
Gma12g00303 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma12g00303 253 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 213 - -
Gma12g00303 253 Gene3D - 68 137 - -
Gma12g00303 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma12g00303 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00303 Gma-Chr12 2443087 2444532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00303 1 253 MYB Transcription Factor Family AT4G34990 59.489 1.56e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g00303 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00303 K09422 - gmx:778030 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00303 12 2443087 2444532 Gma12g00303 12 2443087 2444532 ECH
Gma12g00303 12 2443087 2444532 Gma11g00976 11 8293135 8294004 GST