Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00297 ATGCATAGAGCGATCGTGTTTCTCATTCACCCACGATTCCTCCTCCTCTTCCTTGTCCTCTCAATTTTCCTCATTTTCACATTTTCTGGTTCTACTACTACCAGTGGTTTTGCTACACCTCAACAGGTTGTTGAGATCATTGAGGAGAAACCAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTTGGATATTGATATTGATAAACAGCGTTTAGGTTGTAGGATAGTGATTGGATTATATGGCAAAGTTGTACCGAAAACTGTGGGTATGTCATTTGTTCCACGTGTAGGGGAGAAAGGCAAGAGTGAAAATGGCATAAAGCTTCATTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCATGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGATAATTTCAAGATTAAACATTCTCACGCTGGTGTTGTTTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCTTTACCACAGTGAAGGCCAGATGGTTGGATGGAGAGCATGTTGTCTTTGGCAGGGTTGTTCAAGGCATGGATATTGTGTATGTAATTGAAGGGGGAGCCGGAACCTACAGTGGAAAACCCAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCAAAGAACCACTGGGATGAGGAAAATTGA 714 0.4188 MHRAIVFLIHPRFLLLFLVLSIFLIFTFSGSTTTSGFATPQQVVEIIEEKPEEEPEITHRVFLDIDIDKQRLGCRIVIGLYGKVVPKTVGMSFVPRVGEKGKSENGIKLHYKGTPFHRIISGFVIQGGDIVHHDGKGSESIYGGTFPDDNFKIKHSHAGVVSMANSGPDSNGSQFFFTTVKARWLDGEHVVFGRVVQGMDIVYVIEGGAGTYSGKPRKKVVIADSGEIPKNHWDEEN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00297 237 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 72 225 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 111 128 IPR020892 GO:0003755|GO:0006457
Gma12g00297 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 186 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 159 174 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 80 95 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 128 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 187 202 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 237 - -
Gma12g00297 237 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 25 237 - -
Gma12g00297 237 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 62 227 IPR002130 GO:0000413|GO:0003755
Gma12g00297 237 Gene3D - 46 234 IPR029000 -
Gma12g00297 237 SUPERFAMILY Cyclophilin-like 56 228 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00297 Gma-Chr12 2380002 2385362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00297 104 225 U-box Gene Family AT5G67530 45.669 1.53e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00297 - - gmx:100808983 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00297 12 2380002 2385362 Gma11g00969 11 8229562 8235141 GST