Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00292 ATGAGTGGTAGGGTTTCTGGGAAGGTGAAGTGGTTCAATGATCAGAAGGGGTTTGGATTCATAAGCCCTGACGATGGCAGCGACGATCTCTTCGTTCACCAATCTCAGATCAAATCTGACGGTTTCCGAAGCCTCGCCGAAGGAGAGTCCGTTGAGTTCGCCATTGAATCTGAATCTGACGGACGCGCGAAGGCTGTTGATGTCACTGGCCCCGACGGCGCCAGCGTCCAGGGAACCAGACGAGGCGGTGATGGTGGCCGAAGCTATGGCGGGGGACGAGGAggtggtggaggtggctacggtggaggcggtggctacggtggtggtggtggctacggtggaggcggtggttacggtggtggtggaagaggcggtggaggcggtgCTTGCTACAACTGTGGTGAATCGGGACATCTGGCTAGGGATTGCAGTggaggcggtggtggggacaggtacggaggaggtggtggtggtggcagatatggaggcggcggtggCGGGAGGTACGTTGGTGGTGGAGGCGGCGGCGGCGGCGGAGGAagctgctacagctgtggagagtctgggcattttgccagagattgcccaTCAAGTGCTCGTTGA 603 0.3698 MSGRVSGKVKWFNDQKGFGFISPDDGSDDLFVHQSQIKSDGFRSLAEGESVEFAIESESDGRAKAVDVTGPDGASVQGTRRGGDGGRSYGGGRGGGGGGYGGGGGYGGGGGYGGGGGYGGGGRGGGGGACYNCGESGHLARDCSGGGGGDRYGGGGGGGRYGGGGGGRYVGGGGGGGGGGSCYSCGESGHFARDCPSSAR 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00292 200 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Gma12g00292 200 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Gma12g00292 200 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Gma12g00292 200 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Gma12g00292 200 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
Gma12g00292 200 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Gma12g00292 200 Pfam Zinc knuckle 129 144 IPR001878 GO:0003676|GO:0008270
Gma12g00292 200 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Gma12g00292 200 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Gma12g00292 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Gma12g00292 200 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Gma12g00292 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Gma12g00292 200 Gene3D - 177 200 - -
Gma12g00292 200 Gene3D - 123 151 - -
Gma12g00292 200 SUPERFAMILY Retrovirus zinc finger-like domains 163 198 IPR036875 GO:0003676|GO:0008270
Gma12g00292 200 MobiDBLite consensus disorder prediction 62 93 - -
Gma12g00292 200 ProSiteProfiles Zinc finger CCHC-type profile. 130 143 IPR001878 GO:0003676|GO:0008270
Gma12g00292 200 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Gma12g00292 200 PANTHER COLD SHOCK PROTEIN 1 4 198 - -
Gma12g00292 200 SUPERFAMILY Retrovirus zinc finger-like domains 121 147 IPR036875 GO:0003676|GO:0008270
Gma12g00292 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 198 - -
Gma12g00292 200 Gene3D - 1 82 IPR012340 -
Gma12g00292 200 SMART csp_8 6 71 IPR011129 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00292 Gma-Chr12 2320160 2320762 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Gma12g00292 CSD 7.5e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00292 - K09250 gmx:100795875 214.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00292 12 2320160 2320762 Gma12g00292 12 2320160 2320762 ECH
Gma12g00292 12 2320160 2320762 Gma11g00964 11 8177672 8178563 GST