Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00291 ATGGCTTCCCTCTATGACGTGCTTGGAATTTCAGTGGGTGCAAGCTGCATCGAAATAAAGGCTGCTTACAGAAAGCTGGCAAGAACACACCATCCTGATGTTGTGGCCATGGATCAGAAGGAAAGCTCAGCGAACCAATTCATGATGATCCATTCAGCTTACTCAACTTTGTCTGACCCAGAGAAGCGAGCACAATATGATAGAGAAATCTATAGATACAGAAGATCAGCAAATATAGCAGGAAGAAATCAGACATTTTCCTATGCTGGAAGTGGAAGGAAATGGGAAACAGACCAATGTTGGTAA 306 0.4314 MASLYDVLGISVGASCIEIKAAYRKLARTHHPDVVAMDQKESSANQFMMIHSAYSTLSDPEKRAQYDREIYRYRRSANIAGRNQTFSYAGSGRKWETDQCW 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00291 101 Pfam DnaJ domain 4 67 IPR001623 -
Gma12g00291 101 PRINTS DnaJ domain signature 5 23 IPR001623 -
Gma12g00291 101 PRINTS DnaJ domain signature 23 38 IPR001623 -
Gma12g00291 101 PRINTS DnaJ domain signature 42 62 IPR001623 -
Gma12g00291 101 PRINTS DnaJ domain signature 62 81 IPR001623 -
Gma12g00291 101 PANTHER - 2 101 - -
Gma12g00291 101 SUPERFAMILY Chaperone J-domain 2 88 IPR036869 -
Gma12g00291 101 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Gma12g00291 101 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 101 - -
Gma12g00291 101 CDD DnaJ 5 59 IPR001623 -
Gma12g00291 101 SMART dnaj_3 2 62 IPR001623 -
Gma12g00291 101 Gene3D DnaJ domain 1 88 IPR036869 -
Gma12g00291 101 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00291 Gma-Chr12 2309127 2309984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00291 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 1.30e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00291 - - gmx:100798520 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00291 12 2309127 2309984 Gma12g00291 12 2309127 2309984 ECH
Gma16g01191 16 29529837 29530834 Gma12g00291 12 2309127 2309984 ECH
Gma12g00291 12 2309127 2309984 Gma11g00703 11 5901021 5901942 ECH
Gma12g00291 12 2309127 2309984 Gma01g01697 01 52639551 52640839 ECH
Gma12g00291 12 2309127 2309984 Gma02g00438 02 4452199 4452813 ECH
Gma12g00291 12 2309127 2309984 Gma16g01191 16 29529837 29530834 ECH
Gma12g00291 12 2309127 2309984 Gma11g00963 11 8163402 8164478 GST