Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00276 ATGGCATCGGCGTTCGTCAAGCTCGACGATTCCCCTATGTTCCAGAGACAGTTATATTCTCTTGAAGAAACAACTGATGAGTTAACGGATCGGTGCCAAAAACTATATAAAGGGTGCAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTTCCTTTGCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGGTTGGCCCGTGATATCTAAGTTTATCACCACACTGCGTGAGCTAGCTTCTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACAGAGTTTATGAACCTTGATTTGCAAGGTGCAAAGGATTCTCGTCGTCGTTTTGACAAAGCTGTGCATTCGTATGATCAGTCACGGGAGAAGTTTGTCTCTTTGAAGAAGAATACACCGGAAGATGTTGTTGCTGAATTAGAAGAGGATCTACAAAATTCAAAATCAGCATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGTTATGACTTGCTAAGCCAAATGGAGCCCTATATTCACCAGGTGTTAACATATGCACAGCAATCAAAAGAACTTGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTGGAGAATATACGAGCTTCTAGCAATTATACAGAAACTGTTCCAGGTTCTGATGGCACCCATGTTGTAGGTTTGAACTCTTACAGAAGTTTTGAAGCAGGGGTGCAACCTGCAACAACCAAAGGGGAGGCAAGTAATTGGCCTTTTCTTGTTCAAACAGTTAAACAGGGTTATCTGTTAAAACGATCATCAAGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCATGGGCTCTCAGTCATATAATTATTCTCGCTTGTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGACACAATAGGGCTTCGTCTCTAAATGAGGATATTTTAGGTTCTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGACGATACAGATCTACGTCTTTGCTTCCGAATAATTTCTCCCTCAAAATCATACACACTACAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCGCTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATTTGGTAGAGTGCATTCCCAGAATAGAAACTCAGCAACTGGTGCTTCTTTGGCAAGTCAATCAGAGGATAGTCAGAAATCATTGAGGGATGACGTATATTCCAAGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCACCGAAATCTTGGTGTTCATGTCTCAAAGGTTAGATCTATAACGTTAGATGTTAGGGTTTGGGAAAATACCGTTCTGGAGTTATTTGATAACTTAGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTGATCATGAAAGGGTAGGTGAACCAAATGTGCCAATGAAACCTTGCTCTGCAGATGCCTTCCAACACAAGGAGAAGTACATCCAAGCAAAGTATGTAGAGAAATCACTGATCATCCGAGAAGAGGATATACCCGAGAATCCTTCAGTTTCCATAAGAATCTGGCAAGCAGTTCAGGCTGTAAATGTACGAGAAGTGTATCGCCTTATTGCCACATCAACATCAAATCTGATAAACACAAAATATTATGATGAGGCTCACCATGCTGCTGATGCCAAAGGGCATCAGCATGGTCCTGAAGCCTGTCTGAAAGTTGAAGAGACTACTGAGACAGAGAGGTGTTTCCGTGGATGGTCATTATTACATCTGGCATGTCATTCTGGCAGTGCACTCATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGAAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATCAACTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAGTTAAAGATGCTGGAGGACTCACTGTACTTGAAAGAGCAATGGAGAGGGGTGCGATAACTGACGAAGAGCTATTTATCTTGCTTGCTGAATGCCAGTGA 2355 0.4153 MASAFVKLDDSPMFQRQLYSLEETTDELTDRCQKLYKGCKKFMTALGEAYNGEISFADSLEVFGGGQDDPVSVSIGGWPVISKFITTLRELASFKELLRSQVEHVLIDRLTEFMNLDLQGAKDSRRRFDKAVHSYDQSREKFVSLKKNTPEDVVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIRASSNYTETVPGSDGTHVVGLNSYRSFEAGVQPATTKGEASNWPFLVQTVKQGYLLKRSSSSRGDWKRRFFVLDNQGNLYYYRVKGVKPMGSQSYNYSRLSEQNSGMFGRFRSRHNRASSLNEDILGSCTVDLCTSTIKMDADDTDLRLCFRIISPSKSYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPQFGRVHSQNRNSATGASLASQSEDSQKSLRDDVYSKEVGSVSKILRGIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVRVWENTVLELFDNLGNAYCNSIWEGLLLLDHERVGEPNVPMKPCSADAFQHKEKYIQAKYVEKSLIIREEDIPENPSVSIRIWQAVQAVNVREVYRLIATSTSNLINTKYYDEAHHAADAKGHQHGPEACLKVEETTETERCFRGWSLLHLACHSGSALMVELLLQFGADVNMCDYHERTPLHHCITSGKNQLAKFLLRRGARPSVKDAGGLTVLERAMERGAITDEELFILLAECQ 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00276 784 CDD BAR_SFC_plant 17 218 IPR035670 -
Gma12g00276 784 Pfam BAR domain of APPL family 8 231 - -
Gma12g00276 784 MobiDBLite consensus disorder prediction 456 473 - -
Gma12g00276 784 SMART 5bar 1 221 IPR004148 GO:0005515|GO:0005737
Gma12g00276 784 PANTHER CENTAURIN/ARF 3 780 IPR045258 GO:0005096
Gma12g00276 784 CDD ArfGap 492 607 - -
Gma12g00276 784 SMART arf_gap_3 488 620 IPR001164 GO:0005096
Gma12g00276 784 CDD PH_ACAP 307 442 - -
Gma12g00276 784 Gene3D - 303 450 IPR011993 -
Gma12g00276 784 MobiDBLite consensus disorder prediction 456 479 - -
Gma12g00276 784 ProSiteProfiles ARF GTPase-activating proteins domain profile. 488 620 IPR001164 GO:0005096
Gma12g00276 784 ProSiteProfiles Ankyrin repeat region circular profile. 691 722 - -
Gma12g00276 784 SMART PH_update 305 440 IPR001849 -
Gma12g00276 784 Pfam Ankyrin repeats (3 copies) 687 755 IPR002110 GO:0005515
Gma12g00276 784 SUPERFAMILY ArfGap/RecO-like zinc finger 490 613 IPR037278 -
Gma12g00276 784 Pfam PH domain 306 437 IPR001849 -
Gma12g00276 784 SMART ANK_2a 691 720 IPR002110 GO:0005515
Gma12g00276 784 SMART ANK_2a 724 753 IPR002110 GO:0005515
Gma12g00276 784 ProSiteProfiles Ankyrin repeat region circular profile. 724 755 - -
Gma12g00276 784 ProSiteProfiles PH domain profile. 304 438 IPR001849 -
Gma12g00276 784 ProSiteProfiles Ankyrin repeat profile. 691 723 IPR002110 GO:0005515
Gma12g00276 784 Coils Coil 230 250 - -
Gma12g00276 784 Pfam Putative GTPase activating protein for Arf 492 612 IPR001164 GO:0005096
Gma12g00276 784 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 780 - -
Gma12g00276 784 SUPERFAMILY PH domain-like 259 437 - -
Gma12g00276 784 PRINTS HIV Rev interacting protein signature 519 536 IPR001164 GO:0005096
Gma12g00276 784 PRINTS HIV Rev interacting protein signature 542 563 IPR001164 GO:0005096
Gma12g00276 784 PRINTS HIV Rev interacting protein signature 500 519 IPR001164 GO:0005096
Gma12g00276 784 SUPERFAMILY BAR/IMD domain-like 8 327 IPR027267 -
Gma12g00276 784 Gene3D - 620 780 IPR036770 -
Gma12g00276 784 SUPERFAMILY Ankyrin repeat 629 781 IPR036770 -
Gma12g00276 784 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Gma12g00276 784 Gene3D Arf GTPase activating protein 468 619 IPR038508 -
Gma12g00276 784 Gene3D Arfaptin homology (AH) domain/BAR domain 7 254 IPR027267 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00276 Gma-Chr12 2216491 2229345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00276 498 607 C2H2 Transcription Factor Family AT4G05330 40.541 4.76e-19 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00276 K12489 - gmx:100796740 1538.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00276 12 2216491 2229345 Gma11g00953 11 8057476 8069978 GST