Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00267 ATGgctcccaaacgaggtggaaaggctccggctcttgccgctaagaagaagcctgagaaggtttcgaatccgttgttcgagaagcgtccaaagcagttcggaatcggaggggcgttgcctccgaagagagacttgactcggttcgtgaagtggccaaagaatgttcaaattcagaggaagaagaggattctgaagcagaggttgaaggttcctccagctttgaaccagttcaccaaaactcttgacaaaaacctagCAACAAGTCTGTTCAAGTTACTTCTGAAATACAGGCCAGAGGACAAAGCAGAAAAGAAGGAGAGGCTCTTGAAAAGGGCTCAGGCAGAGGCTGAAGGCAAAACCGTTGAAGCTAAGAAGCCCATTGTTGTGAAGTATGGTCTCAACCATGTTACCTACCTCATTGAGCAGCAGAACAAAGCACAGCTTGTTGTGATTGCTCACGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCTGCATTGTGCAGGAAGATGGAAATTCCGTACTGCATTGTGAAGGGAAAGGCCCGCTTGGGAACGGTTGTCCATAAGAAAACTGCATCTGTTTTGTGCTTGACAACTGTTAAGAATGAAGATAAATTGGAGTTCAGCAGAGTTTTGGAGGCTATCAAGGCTAATTTCAATGACAAATATGACGAGTACAGAAAGAAATGGGGTGGTGGAATCATGGGATCCAAATCTCAAGCGAAAACCAGAGCAAAGGAGAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGAATTAG 783 0.3014 MAPKRGGKAPALAAKKKPEKVSNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00267 260 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 207 IPR004038 -
Gma12g00267 260 PANTHER BNAA03G47020D PROTEIN 2 258 - -
Gma12g00267 260 SUPERFAMILY L30e-like 89 231 IPR029064 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 219 239 IPR001921 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 187 211 IPR001921 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Gma12g00267 260 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Gma12g00267 260 Coils Coil 102 122 - -
Gma12g00267 260 MobiDBLite consensus disorder prediction 1 26 - -
Gma12g00267 260 PRINTS Ribosomal protein L7A/RS6 family signature 175 189 IPR018492 -
Gma12g00267 260 PRINTS Ribosomal protein L7A/RS6 family signature 165 175 IPR018492 -
Gma12g00267 260 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Gma12g00267 260 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 258 - -
Gma12g00267 260 ProSitePatterns Ribosomal protein L7Ae signature. 168 185 IPR004037 GO:0042254|GO:1990904
Gma12g00267 260 Gene3D - 51 235 IPR029064 -
Gma12g00267 260 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00267 Gma-Chr12 2154602 2156271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00267 1 260 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.000 2.19e-166 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00267 K02936 - gmx:100775472 471.085