Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00260 ATGGCAACCAAAAGTTTGAGATGCATTGCCTTTGCCCAAAAGAACTTATTATGCGAAAAGCTTGAAGAGACAGAACTCACATTATTGGGGATACTTGGGTTGAAAGACCCTTGTAGGCCAGGAGTTGGAGCAGCAGTTGAATCATGCACGAATGCTGGAGTGAAGATCAAGATGATAACAGGAGATAATGTGCACACAGCAAGGGCCATAGCCTTTGAATGTGGCATTCTTGATGATGAATTGGATTATGAAGATGAAGCAGCAGTGGTTGAAGGCTTTCAATTCAGAAATTTCTCACACGAGGAAAGAATGGAAAAGATTGACAAAATCAGAGTCATCGCTAGATCATCTCCATTTGACAAGCTTCTGATGGTTCAATGTTTGAAGCAGAAGGGTCATGTGGTGGCAGTCACAGGTGATGACACAAATGATGCACCTGCTCTGAAGGAAGCTGACATTGGACTTTCCATGGAAATACAAGGCACCGAAGTGGCAAAGGAGAGCTCAGACATTGTTATCCTTGACGACGATTTCTCTTCTGTGGTCACTGTACTATGGTGGGGGAGATGTGTGTACACAAACATTCAGAAGTTCATTCAGTTTCAGCTCACAGTTAATGTTGCTGCACTTGCCATCAACTTTGTAGCTGCAGTTTCTTCTGGTAAAGTGCCTCTTTCAGCTGTCCAGCTTCTGTGGGTAAACCTGATAATGGATACTCTTGGAGCTCTGGCCTTGGCCACTGAGCAACCCACTAGTGATCTCATGAAAATGCCACCTGTGGGAAGAGTTGAACCACTTATAACTAGAGTTACGTGGAGGAACCTCATTTTACAGGCAGTGTATCAAGTGTTTGTCTTGCTGGTTTTACAATTCCAGGGAAGATCAATCTTTGGTGTCAATGAGAAGGTGAAGAACACTATGATTTTCAATGCTTTTGTCCTCTGCCAAGTCTTCAATGAGTTCAACGCAAGGAAGCTGGAGAAGAAGAACATCTTTGAGGGGCTTGGTAAAAATAAGTTGTTTATGGTAATTGTGGGCTTAACTGTAGTGCTTCAGCTAGTGATGGTTGAGTTTCTCAAGAAGTTTGCCAATACTGAGAGATTGACTTGGGAGCAATGGGGTGTTTGTGTTGCCATTGGAGCTTTGTCTTGGACAATTGGTCTGCTGGTGAAGTGTATGCCAGTTGTTCGCAACAAGTAG 1200 0.4342 MATKSLRCIAFAQKNLLCEKLEETELTLLGILGLKDPCRPGVGAAVESCTNAGVKIKMITGDNVHTARAIAFECGILDDELDYEDEAAVVEGFQFRNFSHEERMEKIDKIRVIARSSPFDKLLMVQCLKQKGHVVAVTGDDTNDAPALKEADIGLSMEIQGTEVAKESSDIVILDDDFSSVVTVLWWGRCVYTNIQKFIQFQLTVNVAALAINFVAAVSSGKVPLSAVQLLWVNLIMDTLGALALATEQPTSDLMKMPPVGRVEPLITRVTWRNLILQAVYQVFVLLVLQFQGRSIFGVNEKVKNTMIFNAFVLCQVFNEFNARKLEKKNIFEGLGKNKLFMVIVGLTVVLQLVMVEFLKKFANTERLTWEQWGVCVAIGALSWTIGLLVKCMPVVRNK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00260 399 PRINTS H+-transporting ATPase (proton pump) signature 138 154 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00260 399 PRINTS H+-transporting ATPase (proton pump) signature 170 195 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00260 399 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 396 IPR023298 -
Gma12g00260 399 PRINTS P-type cation-transporting ATPase superfamily signature 30 41 - -
Gma12g00260 399 PRINTS P-type cation-transporting ATPase superfamily signature 52 62 - -
Gma12g00260 399 PRINTS P-type cation-transporting ATPase superfamily signature 138 157 - -
Gma12g00260 399 PRINTS P-type cation-transporting ATPase superfamily signature 162 174 - -
Gma12g00260 399 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 109 218 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00260 399 Gene3D - 38 183 IPR023214 -
Gma12g00260 399 Pfam Cation transporting ATPase, C-terminus 223 391 IPR006068 -
Gma12g00260 399 Gene3D - 184 391 - -
Gma12g00260 399 SUPERFAMILY HAD-like 27 243 IPR036412 -
Gma12g00260 399 Gene3D - 2 37 IPR023299 GO:0000166
Gma12g00260 399 PANTHER CALCIUM-TRANSPORTING ATPASE 1 386 - -
Gma12g00260 399 Pfam haloacid dehalogenase-like hydrolase 27 152 - -
Gma12g00260 399 PANTHER CATION TRANSPORTING ATPASE 1 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00260 Gma-Chr12 2053746 2054945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00260 1 395 Primary Pumps ATPases AT3G63380 72.222 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00260 K01537 - gmx:100784119 659.833