Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00258 ATGTACTTGAGGAGAATACAATGCAGAGATCGGACATGGGCTTTGGTGTTGCAGCCATCGAAATACTTCTTTAGGCCAAGATTCTCTGATCAACGATATTTTCAATCTTTGTCCCCTAAGACCACTGTGGAAGAATATGCTTCACATGGAAGGATCATCAGAAAACATCTTTTAGGCTTAGATTTATGTAGGCATACTTCATCTAGAAATAGTTTCACTGTTCCGGACCGAAGGCCTAGTTTATGTCTTAACAGTACTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACATGTAAATGTTAATGATGGAGCTAACTTTGATAAAGGACAGAAACAACAAGAGAAGTTTGGGAAAGATGTCAAGTACAGCAATGCACATGCACGACTTGGAGAACAGGAACAAGAGGAATGGCTTAATAATGAGAAGCTTTCTATAGAAAGTAAAAGGAGAGAATCACCATTTTTGACAACAAGGGATAAGTTTAAAAAAGAGTTTATGAGAAGAATTATTCCTTGGGAGAAGATAAACATTTCCTGGGACACATTTCCTTATCACATTCATGAGAATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGCTTGCTTCATCTTTTGGCAGTCGCCTCACATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGAACTGAGCTGTATCGTGAGAGATTGGTTAGGGCTCTTGCACAAGATTTACAAGTTCCTCTGTTAGTGCTTGATAACAGCATTCTTGCTCCTTATGATATTGATGATGATTTATCATCAGATTACGAGTCTGACGAGGATAATGCAGAGTCTGGGGAGGAGGGTTCTTTGGAATCAGAGAATGAGGATGATAATGATGCTACAAATGAAGAAGAGTGGGCTAGCAGTACCGAGACCAAGTCAGATGCAAGTGATAATGAAGATGCAATAGCGGCTGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTATTCGGAAACTTGTTCCTTACAATGTTGGAGAATTTGAAAAGATAGTGTCTGGTGAATCTGAGAATTCTGAGTCATCTAAGTCTAATGATGCCAAATCTTCTGATCAATCTGGATGCCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTAAAGTTAGAGACGAGGATAGGCCTTTAACTAAAGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTCATCTTGGATATTAATGAAGATAGGGTCAATGAGGGCGAGGTGGAGAACCTTAATGAGGATCATACAAAACCCCCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACATGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGCATCGCAAACAACCTCTTATTGTCTATTTTCCGGACAGTTCACAATGGTTACATAAAGCTGTTCCTAAGTCACACCGAAATGAGTTTTTTCATAAGGTTGAAGAGATGTTTGACCGGTTATCTGGCCCTATAGTGTTCATTTGTGGGCAAAACAAAATTCAGTCAGGATCAAAGGAGAAAGAAGAATTCACAATGATACTTCCGAACTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCATTTAACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGATGAAATTAACAAGCTCTTCTCCAATGTTTTGAGTATACTTCCACCTAAGGATGAGAATCTGCTGGCAACATTCAAGAAACAACTTGAGGAAGATAAGAAAATTGTGACTTCACGTAGTAATTTGAATGCATTACGGAAGGTTCTCGAAGAACATCAGCTATCCTGCATGGACCTTTTGCTTGTAAATACTGATAGCATCATTTTGACAAAGCATAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATTACTTGTCATCATGCTTGCTTCCTTCTATTAAAGGAGAAAGATTGTACCTACCTCGTGAAAGTCTGGAAATTGCAGTCTCAAGATTGAAGGGCCAGGAAACTATGTCACGGAAGCCTTCTCAAAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAATTTGATGACATAGGTGCTCTTGAAGATGTGAAAAAGGCACTTAATGAACTCGTTATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGTGGAAATCTGTTGCGGCCCTGTAAAGGAATTTTACTTTTTGGTCCTCCTGGCACTGGGAAAACCCTTCTGGCCAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTCGGAGATGCTGAAAAACTAACCAAAGCTCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTGTATTTGTCGATGAGGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAACGAGTTTATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATCCTTATTCTAGGTGCAACAAACCGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCGGATGCTGAAAACCGAATGAAGATTTTAAGAATCTTTCTTGCACAAGAAAATTTGAATTTTGATTTTCAGTTTGACAAACTTGCAAACTTCACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCGGCATATAGACCTGTTCAAGAACTCTTAGAGGAAGAAAAGAAGAGAGCCAGTAATGATACAACTTCGGTACTAAGGCCTCTTAATTTGGATGATTTTATTCAGGCAAAATCCAAGGTGGGTCCATCAGTTGCGTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAACGAAATGTACGGAGAAGGAGGTAGTAGAACAAAAGCGCCATTTGGATTTGGGACCTGA 3054 0.4047 MYLRRIQCRDRTWALVLQPSKYFFRPRFSDQRYFQSLSPKTTVEEYASHGRIIRKHLLGLDLCRHTSSRNSFTVPDRRPSLCLNSTQLRAYSSESDGRNASEDKHVNVNDGANFDKGQKQQEKFGKDVKYSNAHARLGEQEQEEWLNNEKLSIESKRRESPFLTTRDKFKKEFMRRIIPWEKINISWDTFPYHIHENTKNLLVECAASHLRHNKLASSFGSRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDIDDDLSSDYESDEDNAESGEEGSLESENEDDNDATNEEEWASSTETKSDASDNEDAIAAAEAHLKKVKAAVIRKLVPYNVGEFEKIVSGESENSESSKSNDAKSSDQSGCQLRKGDRVKYIGPSVKVRDEDRPLTKGQRGEVYEVNGDRVAVILDINEDRVNEGEVENLNEDHTKPPIYWIHVKDIENDLDAQSHDCYIAVEALCEVLHRKQPLIVYFPDSSQWLHKAVPKSHRNEFFHKVEEMFDRLSGPIVFICGQNKIQSGSKEKEEFTMILPNFGRVAKLPLSLKHLTEGIKGDKTSEDDEINKLFSNVLSILPPKDENLLATFKKQLEEDKKIVTSRSNLNALRKVLEEHQLSCMDLLLVNTDSIILTKHKAEKVVGWAKNHYLSSCLLPSIKGERLYLPRESLEIAVSRLKGQETMSRKPSQSLKNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIVFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLNFDFQFDKLANFTDGYSGSDLKNLCIAAAYRPVQELLEEEKKRASNDTTSVLRPLNLDDFIQAKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKAPFGFGT 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00258 1017 MobiDBLite consensus disorder prediction 96 124 - -
Gma12g00258 1017 ProSitePatterns AAA-protein family signature. 867 886 IPR003960 GO:0005524|GO:0016887
Gma12g00258 1017 MobiDBLite consensus disorder prediction 272 307 - -
Gma12g00258 1017 MobiDBLite consensus disorder prediction 357 382 - -
Gma12g00258 1017 Pfam AAA+ lid domain 917 953 IPR041569 -
Gma12g00258 1017 SMART AAA_5 760 897 IPR003593 -
Gma12g00258 1017 Pfam ATPase family associated with various cellular activities (AAA) 764 894 IPR003959 GO:0005524|GO:0016887
Gma12g00258 1017 Gene3D - 896 981 - -
Gma12g00258 1017 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 398 1015 - -
Gma12g00258 1017 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 395 - -
Gma12g00258 1017 CDD AAA 762 895 - -
Gma12g00258 1017 MobiDBLite consensus disorder prediction 92 124 - -
Gma12g00258 1017 Gene3D - 723 999 IPR027417 -
Gma12g00258 1017 MobiDBLite consensus disorder prediction 271 321 - -
Gma12g00258 1017 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 398 1015 - -
Gma12g00258 1017 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 395 - -
Gma12g00258 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 722 952 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00258 Gma-Chr12 2007533 2027127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00258 723 955 Calmodulin-binding Proteins AT3G56690 38.136 1.89e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00258 - - gmx:100802939 1927.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00258 12 2007533 2027127 Gma11g00934 11 7807251 7823748 GST