Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00257 ATGGGCAAGTCAAGCAAGAAATCAGCTCTCAAGGTCGACGCTGTTCCAGCTGTGGTTCCGCCATCCAAGTCTGCCAAGAAGGGAGGCAAGAGACAAGCTCAAGATGAAATTGAGAAGCAATTGAGTGCCAAAAAACAGAAGATAAATGAGGTTGCTCAGAAACAAAAGGAGGCAAAGGTGCAAAAGAAGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCACCCAAATCTGCTGTTCTTTCAAAAAAGATACCTGCTAAGAATGGTGCTGCCCCTCCAAAGAAAGGCAAGCTCGCCTCCAGTTCTTCTGAAGATGACTCCTCTGATGAGGATGGTGTGCGTGCAAAGAAGCCACAGAAAATGGTTGCTGAGAAACAAAAGAATGGAGCAACTGTGCAAAAGAAAAAGGTGGAAAGTAGTTCAGATGATTCTTCTTCAGAATCTGAAGCTGAGAAACCTGCAGTAAAAGCTACTGTACCTTCAAAAAAGACACCTACTAAAAATGGCAATTTAAGTACCCCAGCAAAGAAAGGCAAGGCAGCTAGCAGCTCCAGTTCTTCTGATTCATCTGAAGATGACTCTTCTGATGAGGATGAAGTGGCTACAAAAAAGCAAACAAAAGAAGTGAAAGTGCAAAAGGGTAAGGAGGAAAGTAGTTCAGATGATTCTTCATCCGAATCTGAAGATGAGAAACCCGCAGCAAAAGTTGCTGTTCCTCCAAAAAATCAATCTGCCAAAAATGGTACTCTAAGTACTCCAGCTGAGAAAGGCAAGCCAGCTGCCAGTTCAAGCTCATCTGAATCATCTGATGATGACTCTGATGAGGATGAAGCTCCAAAATCCAAGGTGGCCCCTGCAGCAGGCAAGAATGTACCTGCTTCTACAAAGATAACTCAGCCAAGTGAAAGCTCTGAGTCTGATTCTGATAGCAGCTCTGATGAGGACAAAAATAAGAAAAAACCTGCAACTGCTAAGCTGCCTGCATTGTCAGTTGCTCCAGCTTTGAAAGTGGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGACAATGATGCAAAACCCGCCGTAACTGATGTGTCAAAGCCTTCTGCTCTTGCAAAGaagaaggttgacagctctgattctgatgatagcagctctgatgaagataagGGGAAGATGGATATTGATGATGATAGTTCTGATGAAAGTGAAGAGCCACAAAAGAAAAAGACTGTGAAAAATCCAAAAGAAAGCAGTGATAGTTCCGAAGAAGACAGTGAGGATGAAAGTGAGGAGGAACCCTCCAAAACTCCTCAGAAAAGAGACAGGGATGTGGAGATGGTTGATGCTGCCTCGTCTGGAAAGAAAGCGCCTAAGACCCCAGTTACACCCAAAGAAGAAACTGGCGCTTCAAAGACACTATTTGTTGGGAACTTGCCATTTAGTGTTGAACGAGCTGACGTGGAAGATTTCTTCAAGGATGCTGGAGAAGTTGTTGATGTTCGATTTGCTACAGATGATACTGGGAAGTTTAAAGGATTTGGACATGTTGAGTTTGCAACAGCAGCGGCTGCTCAAAAGGCCCTTGGATTGAATGGACAACAATTGTTTAATCGTGAACTCCGACTTGATTTAGCTCGGGAAAGGGGTGCATATACCCCCAACAGCAGCAACTGGAACAACTCATCCCAGAAAAGTGGAAGAGGCCAGTCTCAAACAGTATTTGTAAGGGGTTTCGATACATCCCTTGGAGAAGATGAGATACGAGGGAGTTTGCAAGAACATTTTGGATCTTGTGGGGACATTACCAGGGTGTCGATTCCTAAAGATTATGAGTCTGGTGCTGTCAAGGGGTTTGCTTACGTAGACTTCAGTGACGTTGATAGCATGGGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACCTTAACAGTGGATGAAGCCAAACCTAGAGATAATCAGGGTTCTGGTGGTAGAGGTGCCGGTGGAAGGAgtggtggcggtcgatttggtggtaggagtgtggtggtggtggtcgatttggtggaagtggtggtggccgatttggtggaagaggtggcggtggaaggggtcgtggaaATAGACCCAACCTTGCTGCGGAAGGCACAGGGAAAAAGACCAAATTTGCTGATGACGAGTAGGGTGGCAAGTCTTGCAGATACTTAA 2202 0.4105 MGKSSKKSALKVDAVPAVVPPSKSAKKGGKRQAQDEIEKQLSAKKQKINEVAQKQKEAKVQKKESSSDDSSSESEDEKPAPKSAVLSKKIPAKNGAAPPKKGKLASSSSEDDSSDEDGVRAKKPQKMVAEKQKNGATVQKKKVESSSDDSSSESEAEKPAVKATVPSKKTPTKNGNLSTPAKKGKAASSSSSSDSSEDDSSDEDEVATKKQTKEVKVQKGKEESSSDDSSSESEDEKPAAKVAVPPKNQSAKNGTLSTPAEKGKPAASSSSSESSDDDSDEDEAPKSKVAPAAGKNVPASTKITQPSESSESDSDSSSDEDKNKKKPATAKLPALSVAPALKVESSDDESSESSDEDNDAKPAVTDVSKPSALAKKKVDSSDSDDSSSDEDKGKMDIDDDSSDESEEPQKKKTVKNPKESSDSSEEDSEDESEEEPSKTPQKRDRDVEMVDAASSGKKAPKTPVTPKEETGASKTLFVGNLPFSVERADVEDFFKDAGEVVDVRFATDDTGKFKGFGHVEFATAAAAQKALGLNGQQLFNRELRLDLARERGAYTPNSSNWNNSSQKSGRGQSQTVFVRGFDTSLGEDEIRGSLQEHFGSCGDITRVSIPKDYESGAVKGFAYVDFSDVDSMGKALELHETELGGYTLTVDEAKPRDNQGSGGRGAGGRSGGGRFGGRSVVVVVDLVEVVVADLVEEVAVEGVVEIDPTLLRKAQGKRPNLLMTSRVASLADT 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00257 733 MobiDBLite consensus disorder prediction 298 312 - -
Gma12g00257 733 MobiDBLite consensus disorder prediction 652 671 - -
Gma12g00257 733 MobiDBLite consensus disorder prediction 105 156 - -
Gma12g00257 733 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 267 678 - -
Gma12g00257 733 PANTHER BNAA08G02930D PROTEIN 267 678 - -
Gma12g00257 733 MobiDBLite consensus disorder prediction 248 273 - -
Gma12g00257 733 MobiDBLite consensus disorder prediction 167 195 - -
Gma12g00257 733 Gene3D - 387 556 IPR012677 -
Gma12g00257 733 MobiDBLite consensus disorder prediction 372 422 - -
Gma12g00257 733 Gene3D - 557 680 IPR012677 -
Gma12g00257 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 550 IPR000504 GO:0003723
Gma12g00257 733 Coils Coil 30 64 - -
Gma12g00257 733 MobiDBLite consensus disorder prediction 435 452 - -
Gma12g00257 733 MobiDBLite consensus disorder prediction 1 471 - -
Gma12g00257 733 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 574 655 IPR000504 GO:0003723
Gma12g00257 733 SUPERFAMILY RNA-binding domain, RBD 565 678 IPR035979 GO:0003676
Gma12g00257 733 MobiDBLite consensus disorder prediction 203 241 - -
Gma12g00257 733 CDD RRM2_NUCLs 575 653 IPR034350 -
Gma12g00257 733 SMART rrm1_1 475 546 IPR000504 GO:0003723
Gma12g00257 733 SMART rrm1_1 575 651 IPR000504 GO:0003723
Gma12g00257 733 MobiDBLite consensus disorder prediction 28 83 - -
Gma12g00257 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 576 648 IPR000504 GO:0003723
Gma12g00257 733 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 476 544 IPR000504 GO:0003723
Gma12g00257 733 SUPERFAMILY RNA-binding domain, RBD 465 571 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00257 Gma-Chr12 1999069 2004673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00257 476 637 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 3.84e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00257 K11294 - gmx:100779929 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00257 12 1999069 2004673 Gma11g00933 11 7797489 7802878 GST