Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00242 ATGGAAGTTGGAATGAGAGGATTTAAACCCCCTAGCCCTGGTTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAGCTAGGACCCTTCTTTCCTCAGGACAGCAGCACACCAAAGCTCAAGTTAAATCCTTATTCTTGGAACAACGCTGCCAATCTTTTGTTTTTGGAATCCCCTGTTGGAGTGGGATTCTCCTACACCAACACTAGCAGTGATATAAGTGAGCTTGGTGATACCAATACTGCTAAAGATTCACACACCTTTATCATCAAGTGGTTTAGAAGATTTCCACAATTCAGATCACACAAATTCTACATTTCCGGTGAAAGCTATGCAGGGCACTATGTTCCGCAACTTTCTGAGCTCATTTTCGATAATAATCGCAATCCTGCCGAGAAAGATTACATTAACTTCAAAGGATTCCTGATTGGAAATGCATTATTGGACGACGAAACAGATCAAAAGGGTATGATAGATTATGCGTGGGATCATGCTGTGATATCTGATGGAGTATACAATAACATTACAACCATATGCAATTTCAGCCTTCCAATTCTAAATCAAACAAATGAGTGCAATGTGGAACTCAATAAGTACTTCGCCGTGTATAAGATTATTGATATGTATAGTTTGTAcactcccaggtgtttcagcaacagcaacagcagcagcaccaGAAAGGAAGCCCTTCAAAGTTTTTCAAAAATTGATGGGTGGCACAGAAAACCAGCTGGATATGATCCTTGTGCATCCGATTATACTGAAGTGTACCTAAATAGACCAGAAGTCCAAAAGGCATTACATGCCAATGTCACCAAAATTCCTTATCCATGGACTCACTGCAGCGATAATATCACATTTTGGAATGACTCACCTCAGTCCATGCTTCCTGTCATCAAGAAGCTTATTGCTGGTGGTGTTCGCATTTGGGTTTACAGTGGAGATACCGATGGAAGAATTCCCGTGACTTCAACAAGATACACTCTTAGAAAGTTGGGGCTTGGGATTGTTGAAGATTGGACTCCCTGGTATACCAGCAAGCAGGTGGGAGGATGGAGCATTGCTTACGATGGACTTACTTTTGTTACCATAAGAGGTGCTGGTCATCAAGTTCCTACTTTCACACCCAGGCAAGCTCTGCAGTTGGTTCGACACTTCCTAGCAAATAAGAAATTACCATCTCAACCAATTTAA 1191 0.3988 MEVGMRGFKPPSPGCSSIGYGEAEELGPFFPQDSSTPKLKLNPYSWNNAANLLFLESPVGVGFSYTNTSSDISELGDTNTAKDSHTFIIKWFRRFPQFRSHKFYISGESYAGHYVPQLSELIFDNNRNPAEKDYINFKGFLIGNALLDDETDQKGMIDYAWDHAVISDGVYNNITTICNFSLPILNQTNECNVELNKYFAVYKIIDMYSLYTPRCFSNSNSSSTRKEALQSFSKIDGWHRKPAGYDPCASDYTEVYLNRPEVQKALHANVTKIPYPWTHCSDNITFWNDSPQSMLPVIKKLIAGGVRIWVYSGDTDGRIPVTSTRYTLRKLGLGIVEDWTPWYTSKQVGGWSIAYDGLTFVTIRGAGHQVPTFTPRQALQLVRHFLANKKLPSQPI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00242 396 ProSitePatterns Serine carboxypeptidases, histidine active site. 358 375 IPR033124 GO:0004185
Gma12g00242 396 Pfam Serine carboxypeptidase 13 388 IPR001563 GO:0004185|GO:0006508
Gma12g00242 396 PANTHER CARBOXYPEPTIDASE 12 395 - -
Gma12g00242 396 Gene3D alpha/beta hydrolase 11 394 IPR029058 -
Gma12g00242 396 SUPERFAMILY alpha/beta-Hydrolases 13 391 IPR029058 -
Gma12g00242 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 358 371 IPR001563 GO:0004185|GO:0006508
Gma12g00242 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 42 54 IPR001563 GO:0004185|GO:0006508
Gma12g00242 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 55 65 IPR001563 GO:0004185|GO:0006508
Gma12g00242 396 PRINTS Carboxypeptidase C serine protease (S10) family signature 91 116 IPR001563 GO:0004185|GO:0006508
Gma12g00242 396 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 12 395 IPR001563 GO:0004185|GO:0006508
Gma12g00242 396 ProSitePatterns Serine carboxypeptidases, serine active site. 105 112 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00242 Gma-Chr12 1872274 1876078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00242 256 391 Calmodulin-binding Proteins AT2G22960 28.467 1.82e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00242 K16297 - gmx:100797264 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00242 12 1872274 1876078 Gma11g00918 11 7682005 7690118 GST