Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00231 ATGATATCAAGGTCTGAAGTTGAACCAATGGATTGTACAGCTGCAAGGAAAACACAAAAGGCTGACCGAGAAAAGCTAAGGAGGGATCGATTCAATGTACAGTTTGTAGAACTGGGTAACATTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTAAAGGACCTTACTTCTGAAGTCAGTAAACTTAAAGATGAATATGCTACTCTAAATGAAGAATCTTGTGAGTTGGCTCAGGAGAAAAATGAACTCAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTTTGAAGTTGAATAATCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAACGGATCGTTCAATAATGCTAGCTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTGCTCCTATTGCCATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCAATCATCCCTAACCCTTGTTCAACATTTGTTCCTTATTTAGTCCCCAATACCCTTACTGAACAGCGATCCACCCAGTACATGTCGCCACCTGTTCATCCAGGTTTTCGGTCCCATGTGTCAGGAAAACAAGAGTCCAGAAACAAATCATCCAAGGAGAGCAAGGCTGAAAAACATGAGGATTCTAATGATGTCACTCTGACTCCTGGGTCTTCTGCTGATCAGGATTTATCATCTGGACAAAGAAAATCTAGCAAGTTGTCAAGGAAGGAAAGCAGTTGCACTGAAGTGAGTTCTTTAGATAGGTGCTCTTTGTCTTGTAGCGTTCAGGATAGTTCATCAAGTAGTGTAGTTCACAAGCACAAAGGCTAA 855 0.4175 MISRSEVEPMDCTAARKTQKADREKLRRDRFNVQFVELGNILDPDRPKNDKATILGDTIQLLKDLTSEVSKLKDEYATLNEESCELAQEKNELREEKASLKSDILKLNNQYQQQLRTVSPWTATDRSIMLAPPSYPYPVPMPIPPAPIAMQPYPFYANQHSAIIPNPCSTFVPYLVPNTLTEQRSTQYMSPPVHPGFRSHVSGKQESRNKSSKESKAEKHEDSNDVTLTPGSSADQDLSSGQRKSSKLSRKESSCTEVSSLDRCSLSCSVQDSSSSSVVHKHKG 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00231 284 MobiDBLite consensus disorder prediction 10 25 - -
Gma12g00231 284 SMART finulus 21 71 IPR011598 GO:0046983
Gma12g00231 284 MobiDBLite consensus disorder prediction 1 25 - -
Gma12g00231 284 PANTHER TRANSCRIPTION FACTOR BHLH121 3 283 IPR044579 GO:0003700|GO:0055072
Gma12g00231 284 MobiDBLite consensus disorder prediction 252 277 - -
Gma12g00231 284 MobiDBLite consensus disorder prediction 185 284 - -
Gma12g00231 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 83 IPR036638 GO:0046983
Gma12g00231 284 CDD bHLH_AtILR3_like 20 94 - -
Gma12g00231 284 Coils Coil 55 117 - -
Gma12g00231 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 15 65 IPR011598 GO:0046983
Gma12g00231 284 Pfam Helix-loop-helix DNA-binding domain 16 65 IPR011598 GO:0046983
Gma12g00231 284 MobiDBLite consensus disorder prediction 201 225 - -
Gma12g00231 284 Gene3D - 11 77 IPR036638 GO:0046983
Gma12g00231 284 MobiDBLite consensus disorder prediction 226 243 - -
Gma12g00231 284 PANTHER TRANSCRIPTION FACTOR BHLH121 3 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00231 Gma-Chr12 1795228 1799508 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00231 5 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.967 5.96e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma12g00231 HLH 9.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00231 - - gmx:100817000 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00231 12 1795228 1799508 Gma12g00231 12 1795228 1799508 ECH