Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00207 ATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATCTCTTGTTTAGAGAAATGAAATCCGAGGAAAGGGGTTTGTACTTGATTCATTTGTTGCTCAGTTGTGCAAATCATGTAGCTGCTGGTAACCTTGAAAATGCAAACACCACACTTGAGCAAATTTCCATGCTTGCTTCCCCTGATGGGGACACTATGCAGCGAATCGCAACATATTTTATGGAGTCGCTTGCTGATCGGATTCTTAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAATGACTTTGAtatccgacgaaattctggttcagaagcttttctttgagcttttccctttcttGAAGGTAGCATTTGTTCTCACAAATCAGGCCATCATTGAAGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCTCTCCTTCGAGTATTAAGTGCGCATCCCGAAGGCCCTCCTCATTTGAGAATCACCGGGGTTCATCAGAAAAAGGAGATTCTGGATGAGGTGGCTCATAGACTAACTGAAGAAGCAGAAAAGTTGGATATACCGTTCCAATTCAACCCTGTGGCAAGCAAATTAGAAAATCTTGATTTTGACAAACTTCGGGTGAAAACTGGGGAGGCACTAGCAATAAGTTCCATTCTCCAATTGCATACCCTTTTGGCCTGGGATGATGAAGCCATGCAGAGAAAGTCTCCTCTTCTGTTAAAAAGCTCAAATGGAATTCACCTGCAAAGAGTTCTGCCAATGGGCCAAAGCACATTGGGTGATTTGCTTGAGAAAGATATGGTTAATGGGTACACTCCAAGTCCTGACTCAACCTCATCATCTCCATCATCTTTAACTACTTCCAATTCAATGAATATGGAGAGCTTTCTTAATGCCTTGTGGGGATTATCACCAAAGGTCATGGTTGTGACAGAACAAGACTGTAATCACAATGGTCCAACTCTGATGGATAGGCTTCTTGAAGCTCTATACTCTTATGCAGCATTGTTTGATTGTTTGGAATCCACTGTCTCAAGAACATCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTTGGGGAGGAAATAAAGAACATCATTGCATGTGAGGGATCTAAACGAAAGGAAAGACATGAAAAGCTGGAAAAGTGGTTCCAGAGATTTGATCTAGCTGGGTTTGGCAACGTGCCTTTGAGCTACTTTGGTATGGTGCAAGCAAGGAGGTTCCTGCAGAGCTATGGTTGTGAAGGATACAGAATGAGGGATGAAAATGGTTGTGTGTTAATTTGCTGGGAGGATCGACCAATGTATTCAATATCAGCTTGGAGATCTAGGAAGTAA 1368 0.4123 MMSLSPSLGSPNNLLFREMKSEERGLYLIHLLLSCANHVAAGNLENANTTLEQISMLASPDGDTMQRIATYFMESLADRILKTWPGIHRALNSTRMTLISDEILVQKLFFELFPFLKVAFVLTNQAIIEAMEGEKVIHIIDLNAAEAAQWIALLRVLSAHPEGPPHLRITGVHQKKEILDEVAHRLTEEAEKLDIPFQFNPVASKLENLDFDKLRVKTGEALAISSILQLHTLLAWDDEAMQRKSPLLLKSSNGIHLQRVLPMGQSTLGDLLEKDMVNGYTPSPDSTSSSPSSLTTSNSMNMESFLNALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIIACEGSKRKERHEKLEKWFQRFDLAGFGNVPLSYFGMVQARRFLQSYGCEGYRMRDENGCVLICWEDRPMYSISAWRSRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00207 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 454 IPR005202 -
Gma12g00207 455 MobiDBLite consensus disorder prediction 275 297 - -
Gma12g00207 455 PANTHER SCARECROW-LIKE PROTEIN 3 1 454 IPR030008 GO:0003700|GO:0005634|GO:0009739
Gma12g00207 455 MobiDBLite consensus disorder prediction 280 297 - -
Gma12g00207 455 ProSiteProfiles GRAS family profile. 19 452 IPR005202 -
Gma12g00207 455 Pfam GRAS domain family 28 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00207 Gma-Chr12 1626657 1629165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00207 16 455 GRAS Transcription Factor Family AT1G50420 65.169 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g00207 GRAS 2.7e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00207 - - gmx:100800450 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00207 12 1626657 1629165 Gma12g00207 12 1626657 1629165 ECH
Gma12g00207 12 1626657 1629165 Gma11g00882 11 7413764 7415264 GST