Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00169 ATGGCTTACATGTGTgcagacagtggcaacctgatggcgattgcgcaacaagtgattaagcagaagcagcagcaagagcagcagaagcagcagcagcagcagcagaccaatccaattccatggaacagcaCTCCTCCTCTCCCTCCCACCGATTTCCCCGACCCCTTCCAATCCGATCCCCCCTTCCACTTCCAACCCTTCCGCTTCTCCGACTTCGACTCCGACGACTGGATGGACTCCCTCATCGCCACCCCCTCCTCCTACACCACCGATTTCCCCTTCCCCTCCTCCGATCTCAACCGCCTCATCTTCCCGCCCCAATCCCCCGACTCGGACTCCCCACAGCAGCCTCTCCTAAAAGCCCTGTCGGAGTGCGCCTCCCTCTCCGAAACCGAACCGGATCAAGCCGCCGAATCCCTAAGCCGTTTGCGGAAATCCGTCTCCCAGCACGGAAACCCCACCGAGCGGGTGGGCTTTTACTTCTGGCAGGCCCTGAGCCGTAAGATGTGGGGAGACAAAGAAAAGATGGAGCCCAGAAGTTGGGAGGAGTTAACACTCTCTTACAAGGCCCTTAACGACGCCTGCCCTTACTCCAAGTTCGCCCACCTAACCGCCAACCAAGCCATCCTCGAAGCCACCGAAAACGCCTCCAACATCCACATCCTCGACTTCGGCATCGTCCAGGGGATCCAGTGGGCCGCGCTCTTGCAAGCTTTCGCCACTCGTGCCTCCGGAAAGCCCAACAAGATCACCATCTCCGGAATCCCCGCCGTCTCCCTTGGTCCCTCTCCCGGCCCTTCTCTCTCCGCCACCGGCAACCGCCTCTCTGACTTCGCCAGGCTCCTCGACTTGAACTTCGTGTTCACGCCCATTCTCACTCCCATTCACCAGCTCGACCACAACAGCTTCTGCATTGACCCAAACGAGGTCTTGGCCGTTAACTTCATGCTTCAGTTGTATAACCTCTTGGACGAGCCTCCCACCGCGGTTGACACTGCGCTCAGGTTGGCCAAGTCTCTCAACCCTAGAATTGTCACCCTTGGCGAGTATGAAGCAAGTGTCACACGTGTCGGGTTTGTCAACCGGTTCAGGACTGCGTTCAAGTACTTCTCTGCTGTGTTTGAGTCTCTGGAGCCTAATTTGGCCGCGGACTCGCCGGAGAGGTTTCAGGTGGAGAGTCTTCTGCTCGGGCGGCGTATTGCCGCTGTTATTGGGCCGGGGCCGGTGAGGGAGAGTATGGAGGACAAGGAGCAGTGGAGGGTTCTGATGGAGCGTGCTGGTTTTGAATCGGTGAGTCTCAGCCATTATGCAATCAGTCAAGCTAAGATACTTCTCTGGAATTACAGCTACAGTTCTCTGTTTTCGCTTGTTGAGTCTAAACCACCGGGGTTTTTGTCTCTGGCTTGGAAGGATGTTCCTCTCTTGACTGTGTCCTCTTGGCGTTAA 1446 0.5242 MAYMCADSGNLMAIAQQVIKQKQQQEQQKQQQQQQTNPIPWNSTPPLPPTDFPDPFQSDPPFHFQPFRFSDFDSDDWMDSLIATPSSYTTDFPFPSSDLNRLIFPPQSPDSDSPQQPLLKALSECASLSETEPDQAAESLSRLRKSVSQHGNPTERVGFYFWQALSRKMWGDKEKMEPRSWEELTLSYKALNDACPYSKFAHLTANQAILEATENASNIHILDFGIVQGIQWAALLQAFATRASGKPNKITISGIPAVSLGPSPGPSLSATGNRLSDFARLLDLNFVFTPILTPIHQLDHNSFCIDPNEVLAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPRIVTLGEYEASVTRVGFVNRFRTAFKYFSAVFESLEPNLAADSPERFQVESLLLGRRIAAVIGPGPVRESMEDKEQWRVLMERAGFESVSLSHYAISQAKILLWNYSYSSLFSLVESKPPGFLSLAWKDVPLLTVSSWR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00169 481 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 119 480 IPR005202 -
Gma12g00169 481 Coils Coil 12 35 - -
Gma12g00169 481 MobiDBLite consensus disorder prediction 19 65 - -
Gma12g00169 481 MobiDBLite consensus disorder prediction 41 60 - -
Gma12g00169 481 ProSiteProfiles GRAS family profile. 109 481 IPR005202 -
Gma12g00169 481 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 119 480 - -
Gma12g00169 481 MobiDBLite consensus disorder prediction 19 40 - -
Gma12g00169 481 Pfam GRAS domain family 119 481 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00169 Gma-Chr12 1281574 1283019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00169 1 481 GRAS Transcription Factor Family AT5G66770 55.461 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma12g00169 GRAS 2.5e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00169 - - gmx:100800989 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00169 12 1281574 1283019 Gma11g00841 11 7080731 7084087 GST