Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00168 ATGGGAGACGAAGAAGAGGAGGAGGTGCTCGGTTCGGGTCAATCAGCCTCCACCAACAGCTTGCCACCTCCCGCCGATAGCACACTCCTCAAATTGAACCATCTCGACATACATGCTGATGATGCTGTATCACACGCTTCTCTTGCTGCCAAGAAGAAAAAGAGAGGCGGCCAACGGGCTGTTGGACCTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACAACATACAATGAGGTGGCAGATGAGCTTGTTGCCGAATTTTCTGAACCAAGCAATAGTGAATTGCCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGCCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCTAAGGACAAAAAAGAAATTCAATGGAGGGGCCTTCCTCGTACTACTGTGAATGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTCGTAGGTCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTGGTGAGAGACCACTGGAAGATAATATGACACATAATCTTACTGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGTCAGCCGCAGGCTCCTACAATTCTAAATGTGTCAAACAGGCCTCCAACATCACCTCCTCTCCCTGGCATACTAAAGAGAAATTTGCTGCAGTTGATAGACCGTCATAATAGTTATTCATCAGTTCAGCCAAGTCATTCTGTAGGTTAG 999 0.4424 MGDEEEEEVLGSGQSASTNSLPPPADSTLLKLNHLDIHADDAVSHASLAAKKKKRGGQRAVGPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSEPSNSELPPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTTVNDIEELKTERLGLRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFGERPLEDNMTHNLTDGGEGSSMSGLCQPQAPTILNVSNRPPTSPPLPGILKRNLLQLIDRHNSYSSVQPSHSVG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00168 332 PANTHER TRANSCRIPTION FACTOR DP 21 310 IPR015648 GO:0005667|GO:0051726
Gma12g00168 332 Coils Coil 164 198 - -
Gma12g00168 332 Gene3D Transcription factor DP 154 274 IPR038168 -
Gma12g00168 332 MobiDBLite consensus disorder prediction 271 295 - -
Gma12g00168 332 CDD DP_DD 153 256 IPR014889 -
Gma12g00168 332 Pfam E2F/DP family winged-helix DNA-binding domain 68 148 IPR003316 GO:0005667|GO:0006355
Gma12g00168 332 SUPERFAMILY "Winged helix" DNA-binding domain 68 149 IPR036390 -
Gma12g00168 332 MobiDBLite consensus disorder prediction 1 28 - -
Gma12g00168 332 Gene3D - 61 153 IPR036388 -
Gma12g00168 332 SMART E2F_TDP_2 65 148 IPR003316 GO:0005667|GO:0006355
Gma12g00168 332 SMART DP_2 155 314 IPR014889 -
Gma12g00168 332 MobiDBLite consensus disorder prediction 11 26 - -
Gma12g00168 332 PANTHER TRANSCRIPTION FACTOR DP 21 310 - -
Gma12g00168 332 Pfam Transcription factor DP 156 269 IPR014889 -
Gma12g00168 332 MobiDBLite consensus disorder prediction 265 306 - -
Gma12g00168 332 MobiDBLite consensus disorder prediction 47 69 - -
Gma12g00168 332 SUPERFAMILY E2F-DP heterodimerization region 155 262 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00168 Gma-Chr12 1269197 1272632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00168 54 257 E2F-DP Transcription Factor Family AT5G02470 53.659 1.12e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Gma12g00168 DP 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00168 K04683 - gmx:100798342 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00168 12 1269197 1272632 Gma11g00840 11 7061003 7064456 GST