Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00158 ATGATGGGGAGAACTCCATGCAGTGATGAAAATGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTATATTCAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACATGCAGGGTTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACTAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCTGAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCTGCTATAGCAGGTCATCTGCCAGGTAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCATTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCGGTGACTCATCGTCCAAGATCAGATCACCTTAATCTTCTATCCAATCTCCAACAATTGCTTGCTGCTACAAACATTGTGAGTAATCTCACAAACACTTGGGACACTAATAATGCTCTAAGGCTACAATCAGATGCCACACAACTAGCCAAACTCCAATTGCTGCAGAACATACTTCATGTCCTTGGGGACACTACTCCTACTTCAAACTTGGACCTACTCAATCCATTTGGACCATCATCATCTTCACTGCCAGATGGTTTTCTAAATGAAGTTTTAGGATTGAATCAGTCTAAGCTTCAAAACCTTTATAATGGCTATTCAGCTCAGAATCAGCCAAATCTCCAAAGCTTTGAACCCCCTCATCAGCAGCAAGTTCTACCAACTGGGAATCAGCATATGGATGGAGGAAGCATTGATAGTAGTTGCATGAAACCTGAAAAGGGTGATGAACAACTTGATGTCCCTTATTCTTCTTCAACACCGTTCAATTCTCTTCCAAATCTAGTTTCAGCTTCACCTGAATGTTCCACTCATGTACTCATGCAAATGGAAAACAAGGTAATGCCAAATGAGTGCTCCGACCCTTCTTCTTCCACTTCAACCAACTTTGAAATGTGGGGAGATTTCATGTATGAGGAAGTAAGAGATGCTTATTGGAAAGATCTCATAGACAAAGAGACTAATTAA 1059 0.4117 MMGRTPCSDENGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKHAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQLLAATNIVSNLTNTWDTNNALRLQSDATQLAKLQLLQNILHVLGDTTPTSNLDLLNPFGPSSSSLPDGFLNEVLGLNQSKLQNLYNGYSAQNQPNLQSFEPPHQQQVLPTGNQHMDGGSIDSSCMKPEKGDEQLDVPYSSSTPFNSLPNLVSASPECSTHVLMQMENKVMPNECSDPSSSTSTNFEMWGDFMYEEVRDAYWKDLIDKETN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00158 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Gma12g00158 352 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gma12g00158 352 SMART sant 14 64 IPR001005 -
Gma12g00158 352 SMART sant 67 115 IPR001005 -
Gma12g00158 352 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gma12g00158 352 Gene3D - 14 67 - -
Gma12g00158 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 350 - -
Gma12g00158 352 PANTHER MYB TRANSCRIPTION FACTOR 4 350 - -
Gma12g00158 352 Gene3D - 70 117 - -
Gma12g00158 352 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Gma12g00158 352 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gma12g00158 352 CDD SANT 70 113 IPR001005 -
Gma12g00158 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Gma12g00158 352 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gma12g00158 352 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00158 Gma-Chr12 1216427 1218152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00158 2 348 MYB Transcription Factor Family AT5G16770 51.541 5.29e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma12g00158 Myb_DNA-binding 2.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00158 K09422 - gmx:547488 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma12g00158 12 1216427 1218152 Gma11g00987 11 8397570 8398913 GST