Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00143 ATGTCGAAAACCTCAGAGATTATTACATGCAAAGCTGCTATATGCTGGGGAATAGGAAAACCTGTGACTGTGGAAGAGATACAAGTAGACCCTCCCAAAGCCACCGAAGTTCGAGTTAAGATGCTTTGTGCCAGTATATGCTCCACAGACATCTCTAGCACAAAAGGATTCCCACATACCAATTTTCCTATAGCACTTGGACACGAAGGAGTTGGTATTATAGAGAGTGTTGGTGATCAAGTAACGAATCTGAAAGAAGGGGATGTGGTAATTCCAACATACATAGGGGAGTGTCAAGAATGTGAGAATTGTGTTTCAGAAAAAACCAATTTGTGTATGACATACCCAGTAAGATGGACTGGTCTAATGCCAGATAACACTTCAAGGATGTCCATCCGAGGAGAGAGGATATACCATATTTTCAGTTGTGCTACATGGTCAGAATACATGGTTAGTGATGCCAACTACGTTCTCAAAGTTGATCCAACCATTGATCGAGCTCATGCCAGTTTCATCTCATGTGGCTTTTCAACTGGATTTGGAGCTGCTTGGAAGGAAGCCAAGGTTGAAAGTGGATCCACTGTAGCTGTTTTTGGTCTTGGGGCTGTTGGATTAGGGGCTGTAATTGGATCCAAAATGCAGGGAGCAAGTAGGATAATTGGAATTGACACAAACGAGAACAAGAGAGCAAAAGGAGAAGCTTTTGGAATAACTGACTTTATAAATCCGGGTGATTCTAATAAATCTGCTTCAGAATTGGTCAAGGAACTAAGTGGTGGAATGGGTGTCGACTATTCTTTTGAGTGTACTGGAGTTTCCACTTTACTCTCTGAATCCTTGGAAGCCACAAAAATTGGAACAGGTAAAGCAATAGTAATAGGTGTAGGAATTGAAATTACTTTGCCATTGGGTCTTTTTGCCATTCTGCTTGGTAGAACTTTGAAAGGTTCTGTTTTTGGAGGACTCAGGGCCATATCAGACCTTTCCATTTTAGCTGACAAAGGCCACAAAAAGGAATTCCCTCTTCAAGAACTCTTCACCCATGAGGTCACATTAGCAGACATAAAcaaagcatttgagctactaaaacaacccaattgtgtcaaagttgtcatcaacatgccaTAG 1128 0.3945 MSKTSEIITCKAAICWGIGKPVTVEEIQVDPPKATEVRVKMLCASICSTDISSTKGFPHTNFPIALGHEGVGIIESVGDQVTNLKEGDVVIPTYIGECQECENCVSEKTNLCMTYPVRWTGLMPDNTSRMSIRGERIYHIFSCATWSEYMVSDANYVLKVDPTIDRAHASFISCGFSTGFGAAWKEAKVESGSTVAVFGLGAVGLGAVIGSKMQGASRIIGIDTNENKRAKGEAFGITDFINPGDSNKSASELVKELSGGMGVDYSFECTGVSTLLSESLEATKIGTGKAIVIGVGIEITLPLGLFAILLGRTLKGSVFGGLRAISDLSILADKGHKKEFPLQELFTHEVTLADINKAFELLKQPNCVKVVINMP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00143 375 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 67 81 IPR002328 GO:0008270|GO:0016491
Gma12g00143 375 SMART PKS_ER_names_mod 17 372 IPR020843 GO:0016491
Gma12g00143 375 PANTHER ALCOHOL DEHYDROGENASE 5 373 - -
Gma12g00143 375 CDD liver_alcohol_DH_like 8 372 - -
Gma12g00143 375 Gene3D - 14 369 - -
Gma12g00143 375 SUPERFAMILY GroES-like 5 190 IPR011032 -
Gma12g00143 375 Gene3D - 179 317 - -
Gma12g00143 375 Pfam Zinc-binding dehydrogenase 202 322 IPR013149 -
Gma12g00143 375 PANTHER ALCOHOL DEHYDROGENASE-RELATED 5 373 - -
Gma12g00143 375 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 336 IPR036291 -
Gma12g00143 375 Pfam Alcohol dehydrogenase GroES-like domain 35 160 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00143 Gma-Chr12 1104501 1106715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00143 35 366 Monolignol Biosynthesis Gene Families AT2G21730 27.988 2.48e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00143 K00121 - gmx:100500200 737.643