Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00109 atggcggacagcgtggtttcctttgttttagatcacttgtcccagctattggcacgtgaagctaagttgttgtgtggcgtggaagacaggatcttgtccctccaaaatgagctcgaaatgatcaacgagttcctcaatacctcaaagagcaagaaggggatcgaaaaaatagtggtgagccaaatcagagatgtggcccacttagctgaggatgtcatcgacacattccttgccaaagttgttgtgcacaagaggagaagcatgttgggaaggatgctccatggcgtggaccatgcaaagttgctccacgatctatccgagaaaatagacaagatcaaaatcaccctgaacgagatacgcgacaacaagatcaaatacgtcgagttccaagaaagcaacaatcaatccacaataaaagaggaggaaaaggcagagtcattgcacgagcgtagaagaaatgttgaggaagaggatgtagtgggttttgtccatgactccaaagtagtcatcaagcagcttgtggaaggaggttcattgcgtaacgccgtctccatcattggcatgggtggattgggcaagaccactcttgctcgaaaggtctataacagcagtcaggtaaaacaatactttgggtgccgcgcttgggtttacgtctcaaatgagtgcagagttagggagcttttgcttggtcttcttgagcagttgatgccaaaccctgaatacgaacatgcaggcaaaaagaaaggcaagaaacacactcaagacgtttctaacttgagcgaggaagagctgaagaaattggtgtggaaacgcttagagaggaaaaggtatctggtggtcctagatgacatgtggaaaagacgagattgggatgaggtgcaagatgcttttccagacaacaacgaaggcagcagaatattgatcactagtcgtttgaaagagttggcctcacatactagccatcatcctccttactatcttaaattcctcaacgaagaagaaagttgggagctcttttgcaggaaagtgtttagaggtgaagaatacccttttgatttggagcctctgggcaaacaaatagttcaaagctgtcgcggtttgcccctctcaatcattgtcttggcagggctgctagccaacaaggaaaagtcatacaaagaatggtctaaagtggttggtcatgtcaattggtatcttacccaagatgagacccaagtaaaggatatagttctcaaactcagttacaacaacttgccaaggagattgaaaccatgctttctgtaccttgggatattccctgaagactttgaaatcccagttaggccattattgcaacgttgggttgccgaaggatttatacaagaaacagggaatagagacccagatgatgtggcagaagactacttgtacgagctcattgatcgtagtttagtccaagtagcaagagtgaaggctagtggaggtgtcaaaatgtgtcgcatacatgatcttctccgagatctttgtatatcagagagcaaagaggacaaagtgtttgaagtttgcacagataacaacattctaatctcaacaaaacctcgtagactgtccatccattgtaacatgggtcactacgtttcttcaagcaacaacgaccattcatgtgcccgttctttgttcatagttggctcaggtaactttttcagtctaagtgaattgaaattgcttttaaaaggtttcaaattggttcgggtgttagacattggaacataccgttgggtacgaaagatcccttccaatttggggaactttatccacttaaggtacttgagaatagaCACCTCGGATGTTAAATTTATTCCAGCTTCTATACTTACCCTTGAAAATCTACAAACCATAGACTTAGGTCATTATTGGAAACTCAATCATGGAAACTCAAGCTTCTATATTTCCCCAGTTGGTTTCTCTGGTCCAATTTCTTTCCCTGCTGGAATATGGAAACTCAATCATTTAAGACATTTGTATGCATCTGGACCTATCATGCTACGAGGCCACTGTTCAGGTTCAAATGAGGTTATGTTGAATCTTCAAACCATCTCTGCCATTGTACTCGATCGACAAACAATATCTCTGATAATGAAAGGAAGGTTTCCCAATCTTAAAAAATTAGGGTTGCAAGTGTCTTCAAGGTGCAAAGACCTTACGCATTTACCTGAGTTGTTGCAGAGCCTACACCAATTATGTATTAAGTGCATCACTGACGAGGGGATGAAAGCGTTGGGAAATCTCATCAAGCTTGGAATTTTGAAACTTATAGGAGAACTAGGATCACGGTTTTCAGATTATTCTTTCGACCTAAATTGCGTTGAAgAGGCAATTTCGTTTTCATTCAGCAAAAGTTGTCCCATGCCATATTCTGATCTCTATGGTTGCTTAAAAATGGTGTCCCCAAAACCTCTCATAAATTGCAATGCACCGTTAGAATTGGTCCTGACAAAGCTAGCTAAACCTGCTTGA 2496 0.1062 MADSVVSFVLDHLSQLLAREAKLLCGVEDRILSLQNELEMINEFLNTSKSKKGIEKIVVSQIRDVAHLAEDVIDTFLAKVVVHKRRSMLGRMLHGVDHAKLLHDLSEKIDKIKITLNEIRDNKIKYVEFQESNNQSTIKEEEKAESLHERRRNVEEEDVVGFVHDSKVVIKQLVEGGSLRNAVSIIGMGGLGKTTLARKVYNSSQVKQYFGCRAWVYVSNECRVRELLLGLLEQLMPNPEYEHAGKKKGKKHTQDVSNLSEEELKKLVWKRLERKRYLVVLDDMWKRRDWDEVQDAFPDNNEGSRILITSRLKELASHTSHHPPYYLKFLNEEESWELFCRKVFRGEEYPFDLEPLGKQIVQSCRGLPLSIIVLAGLLANKEKSYKEWSKVVGHVNWYLTQDETQVKDIVLKLSYNNLPRRLKPCFLYLGIFPEDFEIPVRPLLQRWVAEGFIQETGNRDPDDVAEDYLYELIDRSLVQVARVKASGGVKMCRIHDLLRDLCISESKEDKVFEVCTDNNILISTKPRRLSIHCNMGHYVSSSNNDHSCARSLFIVGSGNFFSLSELKLLLKGFKLVRVLDIGTYRWVRKIPSNLGNFIHLRYLRIDTSDVKFIPASILTLENLQTIDLGHYWKLNHGNSSFYISPVGFSGPISFPAGIWKLNHLRHLYASGPIMLRGHCSGSNEVMLNLQTISAIVLDRQTISLIMKGRFPNLKKLGLQVSSRCKDLTHLPELLQSLHQLCIKCITDEGMKALGNLIKLGILKLIGELGSRFSDYSFDLNCVEEAISFSFSKSCPMPYSDLYGCLKMVSPKPLINCNAPLELVLTKLAKPA 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00109 831 Gene3D - 329 414 IPR042197 -
Gma12g00109 831 Coils Coil 102 122 - -
Gma12g00109 831 Gene3D - 148 323 IPR027417 -
Gma12g00109 831 Gene3D - 415 506 IPR036388 -
Gma12g00109 831 PANTHER DISEASE RESISTANCE PROTEIN RP 41 766 IPR044974 GO:0006952
Gma12g00109 831 PRINTS Disease resistance protein signature 182 197 - -
Gma12g00109 831 PRINTS Disease resistance protein signature 618 634 - -
Gma12g00109 831 PRINTS Disease resistance protein signature 271 285 - -
Gma12g00109 831 PRINTS Disease resistance protein signature 364 378 - -
Gma12g00109 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 429 IPR027417 -
Gma12g00109 831 CDD RX-CC_like 2 121 IPR038005 -
Gma12g00109 831 Pfam NB-ARC domain 168 416 IPR002182 GO:0043531
Gma12g00109 831 PANTHER - 41 766 - -
Gma12g00109 831 SUPERFAMILY L domain-like 493 764 - -
Gma12g00109 831 Pfam Rx N-terminal domain 5 85 IPR041118 -
Gma12g00109 831 Gene3D - 5 98 - -
Gma12g00109 831 Coils Coil 137 157 - -
Gma12g00109 831 Gene3D Ribonuclease Inhibitor 537 796 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00109 Gma-Chr12 855887 859838 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00109 183 501 WRKY Transcription Factor Family AT5G45050 23.824 2.03e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00109 - - gmx:100814688 1355.89