Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00108 ATGGCCAAAAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTATATGGGACACACATTCCACACAAGATAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAGGCTAAAGAGCAAGAGATTGCCTTCAATTAAAGCTCCACTACCCTCAAAAGGAACAACACTAAGTGAGGCAGAGCAAGAACAGAGCAAGCATgctttaacagtggccattgcctcagcagcagctgctgaagctgctgttactgctgctcatgctgctgctgaggttgttCGCCTCACTGGGCAACGCAACGAAAACTCAGAAGAATCTCAACCTGTTAAAACTAGGAATGGTGCTCCACAATCCACATACCAGTGCCAGAGGGAGATTAAAGAATCTGCTGCAGCCATCAAAATTCAAACTGCATTTCGGGGTTACCTGGCAAGGAAGGCTTTGAGGGCGTTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCCGTAAGACGCCAAGCTATGAGTACTCTTAAGTGCTTACAGTCCATTGTGAGCATCCAGTCACAGGTCTGTGCAAGGAGGCTCAAAATGGTTGAAGGGAGATGTGATTACTCTGAAAATGAAGAGATGCAAGATTCTAAAGACAAAATAATTAGGATGGACTCAAACAGTGAAAGAAAGTGGGATGAAAGCACTGTATTGAAGGAAGAGGTAGACACCTCTTGCACAAGCAAGAGAGAAAGAACAAAAGAATACTCATTTAACCACAGAAGGTCAGCAGAATCAGAAAGAAGTAAAGTAAATGGAAGATGGAGGTACTGGCTAGAGCAGTGGGTAGATACACAACTTTCAAAGAGTAAAGAGCTTGAAGATTTAGACTCAGTTTTTAGCTCACATTCTAGAGCTGGGGAGGAATATGGAGGAAGGCAACTTAAGCTGAGAAGTAATATTCAGAGACAAAATCCAGTTGAAGGATTGGATTCTCCAATACTTGGTTCAAGAAGATCTTTTCCTCATAGGAGGCAGTGTTCAGTGGGAGAGGACCACTCATTTTTAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACAGAATCAGCAAAAGCAAAAGCAAGATCAACAAGCTCCCCAAAAATAAGGACTGGGGGGAATGTGGACATGAACTCTGATAGCTATTCACCATGCAAGAAAAAGCTATCCATTGCATCTTCTATTAACAGTGAAATGCTTAGTAATGGTAGGGTGGGCAAGCTCAGTGTTAACCAGCAGCAAAGATCACCAAGCTTTAAGGGACTTTCAGTGCCTATAAAATCAAGCCGAACAACTATCAAGGATCTCAGTATTAATTCAGATTGCTCACTCCGTAATTGGGATCGACAGGCTTCCTTCAAATGA 1383 0.402 MAKKKSWFSLVKRLFIWDTHSTQDKKEKRRKWIFGRLKSKRLPSIKAPLPSKGTTLSEAEQEQSKHALTVAIASAAAAEAAVTAAHAAAEVVRLTGQRNENSEESQPVKTRNGAPQSTYQCQREIKESAAAIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKCLQSIVSIQSQVCARRLKMVEGRCDYSENEEMQDSKDKIIRMDSNSERKWDESTVLKEEVDTSCTSKRERTKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSVFSSHSRAGEEYGGRQLKLRSNIQRQNPVEGLDSPILGSRRSFPHRRQCSVGEDHSFLSSPATPAYMAATESAKAKARSTSSPKIRTGGNVDMNSDSYSPCKKKLSIASSINSEMLSNGRVGKLSVNQQQRSPSFKGLSVPIKSSRTTIKDLSINSDCSLRNWDRQASFK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00108 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 169 IPR027417 -
Gma12g00108 460 Gene3D - 125 176 - -
Gma12g00108 460 MobiDBLite consensus disorder prediction 95 118 - -
Gma12g00108 460 MobiDBLite consensus disorder prediction 364 388 - -
Gma12g00108 460 Pfam Protein of unknown function (DUF4005) 338 421 IPR025064 -
Gma12g00108 460 PANTHER IQ-DOMAIN 11 5 446 - -
Gma12g00108 460 Pfam IQ calmodulin-binding motif 129 148 IPR000048 GO:0005515
Gma12g00108 460 ProSiteProfiles IQ motif profile. 127 155 IPR000048 GO:0005515
Gma12g00108 460 ProSiteProfiles IQ motif profile. 151 178 IPR000048 GO:0005515
Gma12g00108 460 PANTHER IQ-DOMAIN 5-RELATED 5 446 - -
Gma12g00108 460 SMART iq_5 126 148 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00108 Gma-Chr12 851605 855095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00108 1 460 IQD Protein Family AT5G13460 45.135 1.12e-106 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00108 - - gmx:100813620 863.218