Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00104 ATGCTCTCCAAAGAGATTCAGGAAGCAGGCTTTGGAATTGAGCCTGACGAATTAGCCTCCATTGTTCGATCCCATGACACCAAATGTTTAGAACATCATGAAGGAGTTGAAGGACTAGCAAGAGCTGTTCGTGTGTCATTGCAACAGGGCGTTAACACACTAGATGTTCAGCACAGACAAAACGTCTATGGTTTTAACCGCCATGCCGAGAATCCCCCCAGAAGCTTTTGGATGTTCGTTTGGGATGCAATGCAGGACTTAACTCTAATCATCCTTATGGTATGTTCTTTTGTTTCAGTAGGTGTTGGAATCTTAACAGAAGGTTGGCCAAAAGGTATGTACGATGGAGTGGGAATCATACTATGTATCCTTTTAGTGGTCTTTGTCACTTCAATCTGTGACTATAAACAGTCTTTGCAATTTAAGGATTTGGACAAAGAAAAGAAAAATGTGAGCATTCAAGTTACAAGAGACAGCAAAAGACAAAAAGTTTCAATTCATGATCTAGTGGTAGGAGACATAGTCCATCTGTCAATAGGGGACATAGTTCCTGCAGATGGGTTATTCACATCAGGTTTCGGTTTATTAATAGATGAATCAAGTCTATCAGGTGAGAGTGAGGCTGTGAATGTTGATCAAGAGAAGCCTTTTCTTCTATCAGGGACGATGGTGCAAGATGGTTCTGCTAAGATGCTGGTGACATCCGTTGGTGTGAGGACTGAATGGGGAAGATTGATGGATACTCTGAACGAAGGGGGAGATGATGAGACACCACTTCAGGTCAAACTAAATGGGGTTGCCACCATTATTGGAAAGATAGGTTTGTGTTTTGCAATAGTCACATTCATGGTTGTCACGGGAAGGTTTCTCTGCGGGAAAATAGCTCACCATGAGATCACAAAATGGTCACTAAATGATGCATCTAGCCTTCTCAATTTCTTTGCCACTGCTGTCATTATAATAGTTGTGGCAGTTCCTGAGGGACTGCCTTTGGCAGTCACACTAAGCCTTGCATTTGCAATGAAGAAATTGATGAATGACAAGGCACTAGTAAGGCACCTCTCCGCATGCGAGACAATGGGTTCAGCTAGTTGCATTTGCACTGATAAAACCGGGACTTTGACTACAAACCACATGGTTGTGGACAAAATATGGATTTGCCAACAAACTAAGGCCATTAAAATCGGCAACAGTGAAAATGTGTTGAAGTCCTCAATTTCTGAGCATATATCTGATCTCCTTTTGCAATCCATATTCCAGAACACTGGCTCAGAGATAGTCAAAGGGCAAGATGGAAGGAACAAGATCATGGGTACTCCCACAGAGTCCGCATTGCTGGAGTTTGGCTTGCTTTTGGGAGGTGATTCCAAGTTTTATAACGACAAGTATAAAATAGTGAAGGTTGAGCCTTTCAATTCAATCAGGAAAAAGATGTCAGTGCTGGTGGCTCTTCCCGATGGCACCAACAAGTATCGAGCATTCTGCAAAGGAGCATCAGAAATAGTTGTCAAAATGTGTGAAAAAGTTGTTAATGCAGACGGCAAAGTCGTCCAATTGAACGAACAACAAAGGAATAGCGTCACAGAAGTTATCAATGGTTTTGCTTCTCAGGCTCTGAGAACGCTCTGCATTGCCTTCAAGGATATTGAAGGATCTTTTGGAAGTGATAGTATTCCTGAGGATAAGTACACGTTGATAGCTATTATTGGGATCAAGGATCCAGTGAGGCCTGGAGTCAAAGAAGCTGTTAAGACTTGTTTAGAAGCTGGCATTGTCGTTCGAATGGTGACTGGCGACAACATAAATACTGCTAAAGCAATAGCTAGAGAATGCGGCATATTGACAGATGGAATAGCAATAGAGGGACCAGATTTCAGGAACAAGAGCCCTCAAGAACTGATGAACATAATACCAAAAATACAGGTAATGGCCCGATCCTTGCCTCTTGACAAGCACACCTTAGTGAAACATTTGAGGGATGATTTTTATGAGGTTGTGGCAGTAACTGGTGATGGGACCAATGATGCTCCAGCGTTGCATGAGGCTGATATTGGACTTGCTATGGGTATTGCAGGGACAGAGGTAGCCAAAGAGAACGCGGATGTGATTGTAATGGATGATAACTTCGCAACCATAGTGAATGTTACCAGATGGGGCCGTGCTGTTTATATTAATATACAAAAGTTTGTCCAGTTTCAGTTAACAGTTAATGTTGTGGCTCTCATGCTGAATTTTGTTTCAGCATGCGTGTCAGGTTCTGCTCCTCTTACTGCTGTTCAAATGCTTTGGGTAAACATGATCATGGACACCCTGGGCGCATTGGCACTGGCTACAGAACCTCCTCATGATGGGCTTATGAAGATGCCACCAGTTGGAAGGAACGCCAAAATCATCACCAGGGTCATGTGGAGGAATATAATTGGTCAGAGCATCTATCAAATTATTGTCCTTTTGGTTCTCAAATTTCGTGGCAAACAGATTCTCAAGCTCAATGGACCTGATGATGCTACCTTACTTCTCAATACCGTCATATTCAACACCTTTGTATTTTGCCAGGTATTCAACGAGATAAACAGCCGTGACATGGAGAAGATAAATGTTTTGCAAGGCATGTTGAGCAGCTGGGTTTTTCTGATGGTCATGGCCGCAACTATAGGGTTTCAAGCCATAATAGTTCAATATCTTGGTGCTTTTGCTCAAACAGTGCCACTGAGCCAGGAGTTGTGGTTAACAAGCGTGATGATTGGTGCAGTAAGCATAGTTGTAGGTGTTGTCCTAAAGTGCATTCCTGTTCCATCCAGTAACTACGTTGCCACGCACCATGATGGCTACGAGCAGCTTCCAAGTGGACCAGAGCTGGCATGA 2865 0.43 MLSKEIQEAGFGIEPDELASIVRSHDTKCLEHHEGVEGLARAVRVSLQQGVNTLDVQHRQNVYGFNRHAENPPRSFWMFVWDAMQDLTLIILMVCSFVSVGVGILTEGWPKGMYDGVGIILCILLVVFVTSICDYKQSLQFKDLDKEKKNVSIQVTRDSKRQKVSIHDLVVGDIVHLSIGDIVPADGLFTSGFGLLIDESSLSGESEAVNVDQEKPFLLSGTMVQDGSAKMLVTSVGVRTEWGRLMDTLNEGGDDETPLQVKLNGVATIIGKIGLCFAIVTFMVVTGRFLCGKIAHHEITKWSLNDASSLLNFFATAVIIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICQQTKAIKIGNSENVLKSSISEHISDLLLQSIFQNTGSEIVKGQDGRNKIMGTPTESALLEFGLLLGGDSKFYNDKYKIVKVEPFNSIRKKMSVLVALPDGTNKYRAFCKGASEIVVKMCEKVVNADGKVVQLNEQQRNSVTEVINGFASQALRTLCIAFKDIEGSFGSDSIPEDKYTLIAIIGIKDPVRPGVKEAVKTCLEAGIVVRMVTGDNINTAKAIARECGILTDGIAIEGPDFRNKSPQELMNIIPKIQVMARSLPLDKHTLVKHLRDDFYEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIVMDDNFATIVNVTRWGRAVYINIQKFVQFQLTVNVVALMLNFVSACVSGSAPLTAVQMLWVNMIMDTLGALALATEPPHDGLMKMPPVGRNAKIITRVMWRNIIGQSIYQIIVLLVLKFRGKQILKLNGPDDATLLLNTVIFNTFVFCQVFNEINSRDMEKINVLQGMLSSWVFLMVMAATIGFQAIIVQYLGAFAQTVPLSQELWLTSVMIGAVSIVVGVVLKCIPVPSSNYVATHHDGYEQLPSGPELA 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00104 954 Pfam Cation transporter/ATPase, N-terminus 31 99 IPR004014 -
Gma12g00104 954 Pfam Cation transporting ATPase, C-terminus 754 928 IPR006068 -
Gma12g00104 954 CDD P-type_ATPase_Ca_PMCA-like 56 802 - -
Gma12g00104 954 Pfam haloacid dehalogenase-like hydrolase 365 683 - -
Gma12g00104 954 Gene3D - 364 714 IPR023214 -
Gma12g00104 954 PANTHER CATION TRANSPORTING ATPASE 1 938 - -
Gma12g00104 954 PRINTS H+-transporting ATPase (proton pump) signature 669 685 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00104 954 PRINTS H+-transporting ATPase (proton pump) signature 701 726 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00104 954 PRINTS H+-transporting ATPase (proton pump) signature 527 545 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00104 954 SUPERFAMILY Calcium ATPase, transduction domain A 152 248 IPR008250 -
Gma12g00104 954 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 27 931 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma12g00104 954 PRINTS P-type cation-transporting ATPase superfamily signature 589 599 - -
Gma12g00104 954 PRINTS P-type cation-transporting ATPase superfamily signature 367 381 - -
Gma12g00104 954 PRINTS P-type cation-transporting ATPase superfamily signature 669 688 - -
Gma12g00104 954 PRINTS P-type cation-transporting ATPase superfamily signature 693 705 - -
Gma12g00104 954 PRINTS P-type cation-transporting ATPase superfamily signature 567 578 - -
Gma12g00104 954 PRINTS P-type cation-transporting ATPase superfamily signature 198 212 - -
Gma12g00104 954 Gene3D - 50 250 - -
Gma12g00104 954 Pfam E1-E2 ATPase 152 345 - -
Gma12g00104 954 SFLD C1.7: P-type atpase like 349 721 - -
Gma12g00104 954 Gene3D - 377 574 IPR023299 GO:0000166
Gma12g00104 954 SFLD p-type atpase 349 721 IPR044492 -
Gma12g00104 954 Gene3D - 82 929 - -
Gma12g00104 954 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 373 579 IPR023299 GO:0000166
Gma12g00104 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 32 931 IPR023298 -
Gma12g00104 954 SUPERFAMILY HAD-like 366 774 IPR036412 -
Gma12g00104 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 635 757 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00104 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 119 392 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00104 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 464 615 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma12g00104 954 SMART Cation_ATPase_N_a_2 30 104 IPR004014 -
Gma12g00104 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 369 375 IPR018303 -
Gma12g00104 954 PANTHER CALCIUM-TRANSPORTING ATPASE 1 938 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00104 Gma-Chr12 816234 819828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00104 2 951 Primary Pumps ATPases AT3G57330 69.085 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00104 K01537 - gmx:100805063 1861.27