Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00081 ATGAAGAGATTGAGATCGAGCGAGGATCTCCATTCCTACGGTGGAGATAAGGGTAATGGTTGCAAGGATTCGAACAATCTGAACCGTTCGTTTTCGTCGGCGCAGCGGAGCTTTTACTACAAGCCGGAGTATGCGCGCAAGGGTTTGGTCTCGTCGTCTTCGTCGTCGTCGCGGTACGAGAGGGATCGGACAGTGGAGGAGGATCGGGAGGGTTCGCGGCTGGTTCGGAAGCGATCAGAGCACGATTTCGAGGCTTTCGATCGGAGGAAGGGGTTCGATCGGTACAGGGAGAGTGACCGGGGTTTGATTCACCGGTCAGAGAGTTTCTGCGGCGGCGGCGGGTCGCAGAGGGATCAGTTTCCGAAGGGGTTTCGGTCGGAGAGGGAGCGTTCGCGGAGGGAGGGGAGCGTGTCGTCGTGGCGGCGAGGGTTGAAGGATTTGGATGATAGAGAGAGGGTAGTGCGTTCCCCTAAGGGTTTGAGGGATGCGAAGTCTCCTTCGTGGTCGAAGGATTCTGTTTCTGAGAGCGAGCAATCGAAGAAGAGATCTTCTTCTTCTCCCAGGCCCTCCAGAGATGGTAACTCCATCAAGTCTAAGTCCAAGTCTCCCACTTGGTCTAAGGATTCGGAGAGCGAGCAGTCCAAGAGTGTTGAGGTGAAGAAGGCTGAGGAGGAGTCGTTGCAGCAGGTTCAGAGTGGGAGTGGGAGTGGTAGTGAGATGGAGGAAGGGGAGCTTGAGCCTGAACCCCAAGCGGAAACGGTTCCTCCCGTGAGCGAAGACTTGCCCTCTGTTGCTATGGAGACTGATGAGAAGCAAGCTCAGAAGAATGAATGCCACCCTAATGATGACAGCACTGATGCTGCTGTGGATGAGAGACGGGAGTTGTCCAGTAAGGAAGAAGTGAAACCTAATGAGGAGGTTGGTTGTTGTGAGGTAAAGGATGGAGAGGAGATAGAAGCTGATGAGATGGCAGATGTTCGGGATGATTTGTCTGAGAAAATGCTTGTTACTGAGACTGAAGTTGAGTCTGTGGGTAATGGTGATGATGATAAAAAGGAGGAGGCTTTGGATGCTGGAGCTGAGTGCGAGGAGGAAACAAAGAAGGGTGCGGATGTGGATAAGCAGGACAAGGACAAGAACAAGGGTGTAGATCTAGGAACCGGCGCGGATGTTGTCAAACCTGAGTTAAATGATGGAGTATCAACAGGAAATGAAGTTCCAAAGGAAGTGGATAGAGAAATGATGATGGAGAGTGCGGTCAATATTGCAAAGGATAAAGGCAAAGGTGTCTCTGTTGCACTTGTACCACCTACTAATGTTGTTCATGCTTTAGATGATAGCTTGTGGTTGGACAGAGGGTCGAGAGACCTCCCGACGTGTTCTGTTGATGTTATAGAAGGTCCAAGCACAAGGGGATTCGAGTTGTTTTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTAGACCACTCGGTTCTCAACAAGCACAAGGATGACATGGAGCAGCTTGATCTTACTCTTAGCTTGCCGAATGTTCTGTTACCTATTGGTGCTCATGAGACAACATCGCAAGCCCCTGGATCCCCCAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCAATGTCCTTTTCAGGTTCCCAATCATTCTATCATAATCCAAGCTGTTCTCTGACAAAAACTTCAGTGGACTATGAGCAATCTGTTGGCAGTCGCCCCTTATTCGGGGGAATAGATCAAGTTTCCCAGGGATGTTGGCAAGGTCAGTCTCAGAGCGATCCCAAACAGAAAGAAGTTCCTTTTGGTCAAAGAACCTCGGCAAACGGAAATGGCTCCCTTTTCCAGCCTCAGGCATCATGGGGTGTTTTAGACAGTCAAGCTGTAAAGGGTCAACATTCCAGGGTTCTAGAAGGAAGTTCAAAAATGGGCAGTGGACTTGACAGGCAATTGAGTTTTCATAAACAGTTTTCAGGCCAGTCAAGACGCCATGACGATGTTAGATCTCCGTCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTATAGCTTTGAGAAAAAGAGAGAGGTAAGAGAGAGGGGTAGTGGTAGTCTGTATCGAACTACAAGCCAGAAGGAACAAGAACAACTTCTGGTGGGTGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCATGCAATGTCCAGAAAGTTTCATGAAATGACCGGACAGTCCATAGTATGTCTGAAAGAGGGTATTCGTGAAATCATGCTTAATGCAGATAAGCACGGGCAGATACTTGCTTTTCAAAAAGTTCTGCTGAACAGATCTGATATAATCTTGGATGTCCTATTGAAGTGTCACAGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTGACTCATTTTCTTCACCTAGAGAGCAGCATTTCATCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGTAAGAATCTTTCATGTCGAAGTCAGTTGCCTGTGGACGAATGTGATTGCAAGGTTTGTGCACAGAAGAATGGTTTTTGCAGGGAGTGTATGTGCCTTGTGTGTTCAAAGTTTGACAATGCCTCAAATACATGTAGTTGGGTTGGATGTGATGTTTGCCTTCATTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCCTGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTGTTTCAAAATTTTGCAAAAGAATGGTCAGTTGAAACCCTTTGCAAAGAGCTTGAATATGTAAAGAGAATTTTTTCTGCGAGCAAGGATATGAGAGGGAGACAGTTGCATGAGATTGCAGAGCAAGTGCTGCCAAGGTTGGCAAATAAGTCCAATCTCCCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTCGGATGGTGATTCTTCCAAATTACCCATGACAACAAACTTTTCTGGGAAGGAACAAATTAAAGAAAACAATGGAGTAGCTGGGCCCAGCCAGGAAGCAACTTGGATGAAATCTATTTATTCAGAAAAACCACCTCTGTTAGAAAGGCCTGCAAATATCCTTCCTACCTTTGACCAGAATGATAAAAGAACTCTTGTGCAAGAATTGCAGCTGAGTAGTATCCAGAAGGACTTCTGTTTTGATGAATTGGAGAGTATAGTAAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTGAAGCGCATTGCCCTTGCAAAGAATGAGAAAATTGAGGAAGAATATACCAATCGAATTGCCAAGTTACGATTGACTGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAAAGAGCACATCTGGAGTATTTGAACATGAAAATGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACCAAAATGAGCCTTGCCATGTGA 3552 0.4564 MKRLRSSEDLHSYGGDKGNGCKDSNNLNRSFSSAQRSFYYKPEYARKGLVSSSSSSSRYERDRTVEEDREGSRLVRKRSEHDFEAFDRRKGFDRYRESDRGLIHRSESFCGGGGSQRDQFPKGFRSERERSRREGSVSSWRRGLKDLDDRERVVRSPKGLRDAKSPSWSKDSVSESEQSKKRSSSSPRPSRDGNSIKSKSKSPTWSKDSESEQSKSVEVKKAEEESLQQVQSGSGSGSEMEEGELEPEPQAETVPPVSEDLPSVAMETDEKQAQKNECHPNDDSTDAAVDERRELSSKEEVKPNEEVGCCEVKDGEEIEADEMADVRDDLSEKMLVTETEVESVGNGDDDKKEEALDAGAECEEETKKGADVDKQDKDKNKGVDLGTGADVVKPELNDGVSTGNEVPKEVDREMMMESAVNIAKDKGKGVSVALVPPTNVVHALDDSLWLDRGSRDLPTCSVDVIEGPSTRGFELFSRSPVRKVEKVDHSVLNKHKDDMEQLDLTLSLPNVLLPIGAHETTSQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSFYHNPSCSLTKTSVDYEQSVGSRPLFGGIDQVSQGCWQGQSQSDPKQKEVPFGQRTSANGNGSLFQPQASWGVLDSQAVKGQHSRVLEGSSKMGSGLDRQLSFHKQFSGQSRRHDDVRSPSQSVGSHDIGSNYSFEKKREVRERGSGSLYRTTSQKEQEQLLVGGVDFVETIIARIVSEPVHAMSRKFHEMTGQSIVCLKEGIREIMLNADKHGQILAFQKVLLNRSDIILDVLLKCHRVQLEILVALKTGLTHFLHLESSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCAQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGPGTKGMTEMQFHCIACDHPSEMFGFVKEVFQNFAKEWSVETLCKELEYVKRIFSASKDMRGRQLHEIAEQVLPRLANKSNLPEVLRHIMSFLSDGDSSKLPMTTNFSGKEQIKENNGVAGPSQEATWMKSIYSEKPPLLERPANILPTFDQNDKRTLVQELQLSSIQKDFCFDELESIVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYTNRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKMRMETDIKDLLSKMEATKMSLAM 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00081 1183 Pfam PHD - plant homeodomain finger protein 835 955 IPR032881 -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 344 384 - -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 872 892 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1117 1139 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 942 961 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 826 847 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 800 815 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1078 1098 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 746 768 IPR004082 -
Gma12g00081 1183 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 785 800 IPR004082 -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 203 225 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 595 623 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 103 308 - -
Gma12g00081 1183 Coils Coil 1084 1122 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 59 80 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 1 16 - -
Gma12g00081 1183 PANTHER PROTEIN OBERON 4 1 1182 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 47 80 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 264 308 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 1 28 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 338 405 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 188 202 - -
Gma12g00081 1183 Pfam Coiled-coil region of Oberon 1055 1171 IPR032535 -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 121 159 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 691 705 - -
Gma12g00081 1183 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1182 IPR004082 -
Gma12g00081 1183 CDD PHD_OBE1_like 865 921 - -
Gma12g00081 1183 MobiDBLite consensus disorder prediction 664 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00081 Gma-Chr12 626135 631278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00081 835 980 PHD Gene Family AT5G57380 27.397 6.15e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00081 - - gmx:100817003 2234.91