Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00079 ATGAGCGTGATTTCACGAAACATATGGCCGGTTTGCGGAAGCCTCTGCTGTTTCTGCCCTGCGTTGCGAGAGCGATCCAGACATCCAATTAAGCGTTACAAGAAATTGCTCGCCGATATTTTCCCTCGCACACCGGATGAAGAACCAAATGAGCGTATGATCAGTAAGTTATGCGAATATGCCTCCAAGAATCCTCTCCGCGTCCCTAAGGCATTATGCCTTCATTTGTTTCAGATAACGAGCTATCTGGAGCAAAGGTGTTACAGGGAGTTGAGAACTGAAAACTACCAATCTGTCAAAGTTGTTATCTGTATTTATAGGAAGTTGTTGATTTCTTGTAAAGACCAAATGCCTTTGTTTGCAAGTAGCTTGCTTAGCATCATACAGATTCTTCTTGATCAACCACGGCAGGACGAAGTGCAGATTTTAGGTTGCCAAACTCTGTTTGACTTTGTGAACAATCAGAGGGATGGTACTTATATGTTCAATTTAGATGGGTTCATTTTAAAACTTTGCAATCTAGCTCAAGAAATGGGAGATGATGCCAAAGTACAACTTTTGCGGGCTGCTGGCCTTCAAGTCCTTTCATCCATGGTTTGGTTCATGGGTGAATTCACTCATATCTCAGCTGAATTCGACAATGTTGTTTCAGTTGTTTTGGAAAACTACGGGGATGTCAAACAAGATTCTCAAAATGAGAATGCAATGAGGCTTTATTCTTGGAGAGTGGTAGTGAATGACAGAGGAGAAGTTAACGTGCCTGTGGATAATGCCACGAACCCTGGATTTTGGTCACGGGTTTGCATACAAAATATGGCAAAGTTAGCCAAGGAGGGAACAACAGTACGACGTGTTCTGGAATCCTTGTTCCGCTATTTTGATGATACCAATCGCTGGTCTCCAGAACATGGCCTTGCTCTTTCTGTTCTGCTTAACATGCAGTCTATAATCGAAAATTCTGGACATAATACACATTTGTTACTATCCATTTTAGTCAAGCACCTTGATCACAAGAATGTCTTAAAGAATCCTAAAATGCAGCTTGACATTGTTGGTGTTATTACCCATCTTGCTCAACAAACAAGGTCTCAACAATCTGTGGCTATAATTGGTGCATTGAGTGATATGATGAGGCACCTGCGAAAAAGCATACACTGCTCTCTTGATGATTCAAATTTAGGGTCTGAAATAATACAATGGAACCAAAAATACCAAATAGAAGTAGATGAATGCCTTGTACAATTAACAATTAAGATTGCAGATGCAGGTCCTGTTATTGATACCATGGCTGTGTTGTTGGAAAACATGTCTAATATTACTGTTATGGCCAGAACCTTGATTGCTGCAGTCTATAGAACTGCTCAAATAGTTGCTTCAATACCAAATTTGTCATATCAGAACAAGGCAAGATTAGCATTCCCTGAGGCATTATTTCATCAGTTACTCCTGGCAATGGTCCATGCAGACCATGAAACCAGGGTGGGTGCACACCGCATATTTTCTGTTGTTCTTGTGCCATCTTCAGTTTGTCCACAACCTTCCTCTTCAGGAACCCCCATGACAAAGGCAGCTGGTATTCAAAGAATGCTCTCACGAAATGTCTCTGTGTTTTCTTCTTCATCTGCACTCTTTGAGAAATTGGAGAGAAAGCAAAATTCCTTGTCAGAAGATAGTCATACAGATGGAAATGTTAATGATAACTCCATTTTGAACAGATTGAAGTCAACTTATAGTCGTACTACTAGTACAAGAAAATCTGCTATGATCAGTGCTGAATCTACAGATAACAAGAACTCAAAGGTTCATAATTCTTCTATGATGAATAGATTGAAGTCTAGTTACAGCCGTGCTACTAGTGCAAAGAAGCCACAAATACCCACAACCGTGGAAGAAAATACTACAAATACTTCAAATAAACAACAGGTATTACCCATTAGGCTGAGTAGTCATCAGATTAACCTTTTGCTATCATCAATCTGGGCCCAGTCTATCTATCCTCTAAACACATCTGAAAATTTTGAAGCAATTGCTCATACCTACAGCCTTGTCTTGCTAGTTGCTCGGAGTAAGAATTCCTCTCACGAAGCTCTAACTCAAAGTTTTCAGTTGGCTTTTTCCTTAAGGAGCATTTCTCTCAATGAAAATGTAAAACTGCAACCATCACGCCGCAGATCTCTCTTTACACTGGCAACATCCATGATTATCTTCGCATCCAAGGCCTACAACATCCTCTCTCTAATTTCTATTGCTAAAACGACATTGACAGATAGAACAGTTGATCCATTCCTGCAACTGGTTAATGATAGCAAGTTACAAGCGGTTATTGATACAGATAGGCAGCCAAGTAAAGTTTATGGATCAAAAGAGGATGATGAAGATGCTTTAAAGGCACTTTCAGCAATAAGGTTAACTGAGAACCAGTCTAAAGAATCATTTGCTACCATGATAGTGCAGAGTCTGGGAAAATCATCTAATGAATCATCCATCTTAAGAGAACAGCTTCTGAATGATTTTTCACCTGATGATGCCTGTCCTTTGGGAGCCCAGTTATCTGCTGAGACAACAGGAAATATGTACCAGTCTGGACTAAAAGAAGATAAACTTCCTGATATGGTTGATATCTCATTATTTACTATTGACGATGACATTCCACCTTGTGGTTTGGAGAGCCAAGCTAATTCTGATCCACAGCAACAGCCTTCACAAAATCTAAGCCTGCTGAGTGTTGATGACATTTTGGGTTCAgtttcggagacaacacatcaagtaggacggatttctatttcaacaccgtttgacatgccttacAAGGAAATGGCTCTCCATTGTGAGGCCCTCCTCATGGGAAAGCAGCAGAAGATGTCCACTTTCATGGGTACCCATCCAATGCAGGGATATTTTTCATTTAGGATTCCTGCTCCTGAATACAACCAGCAAAAGGACGAGTCCTCAAATTCCAGTGTTCAACAGACTTTACCTTCGAGTGGAAATCCGTTTTTGGATTCAAACTTCGACTCGAATTCATACCACACATTGCCTGACACTTCTCCAAGGCTTTGTGCAACAGCATACCAGCATCAGGCTGCCTTCTTTCAACTGCCAGCATCACGCCCCAAGGAGGCGTATCTTTTATTGGCGTCCTTGCAAAATTTTAGAGCTGTTTTTATGTGCATAGGTCATGCAAAGTCAACAATGGAGGAAGTTCAAGAGTCTCAAACCCAATCATCGCTCGGTCAAGAAGAGGAAAATGAAGTGATTACTGAAAGTTCAGCATTTGTTAAGGGGGAACCGGCACCAGAATTCAGTAGTAACCCCCCAAAAGTTGATTCTGAAGTTGAGGTCCTTCATGAGAAGGTCAGCAAACAAATCATTAAGGAAGGTCATGGCCAGAAACCTTCCAAATATTCAACTTGCTTCTTCCATTACAGGGCGTGGGCTGAGAAATCACAACACAAGTTTGAAGACACATGGCAGGAGCAACGGCCAATTGAGATGGTCTTAGGAAAAGAAAAGAAAGAAATGACTGGGTTGGGCATTGGTGTGGCAAGCATGAAAGCTGGGGAGCGTGCGTTGGTGCGTGTGGGCTGGGAATTAGGATATGGAGAGGAAGGAAGCTTCTCTTTTCCAAATGTTCCACCCAAGGCAGATTTAGTTTATGAAGTTGAGCTCATTGGCTTTGATGAAACAAAAGAAGGGAAAGCTCGCAGTGATATGACTGTGGAGGAAAGAATTGGTGCAGCAGACCGGAGAAAGATGGATGGAAATGCTTTGTATCAGGAAGAAAAACTAGAGGAGGCTATGCAACAGTATGAAATGGCCATTGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGAGATATGGCTCTGGCAGTAAAGAATCCATGCCATCTTAACATGGCAGCCTGTTTGATTAAGCTGAACCGCTACGAAGAAGCCATAGGACAATGCAGCATTGTACTGGGTGAGGATGAGAACAATGTGAAGGCATTATTTAGGCGAGGTAAGGCTAGAGCAGCACTTGGGCAAACGGATACTGCCAGGGAAGATTTTCTAAAGGCAAGTAAATATGCCCCTCAAGACAAAGCAATTGCTAAAGAATTGAGATTGCTTGCTGAACATGACAAGGCTGTTTACCAAAAGCAGAAAGAGATATATAAAGGAATATTTGGACCAAGGCCTCAACCAGTTCCTAAGCCAAGAAATTGGCTCATACTTATTTGGCAGTGGTTGCTTTCAGTATTCTATGGCCTTGTCACGCTCTTCAAGCGTCAAAGGCATAAATCTGACTAA 4305 0.4093 MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPDEEPNERMISKLCEYASKNPLRVPKALCLHLFQITSYLEQRCYRELRTENYQSVKVVICIYRKLLISCKDQMPLFASSLLSIIQILLDQPRQDEVQILGCQTLFDFVNNQRDGTYMFNLDGFILKLCNLAQEMGDDAKVQLLRAAGLQVLSSMVWFMGEFTHISAEFDNVVSVVLENYGDVKQDSQNENAMRLYSWRVVVNDRGEVNVPVDNATNPGFWSRVCIQNMAKLAKEGTTVRRVLESLFRYFDDTNRWSPEHGLALSVLLNMQSIIENSGHNTHLLLSILVKHLDHKNVLKNPKMQLDIVGVITHLAQQTRSQQSVAIIGALSDMMRHLRKSIHCSLDDSNLGSEIIQWNQKYQIEVDECLVQLTIKIADAGPVIDTMAVLLENMSNITVMARTLIAAVYRTAQIVASIPNLSYQNKARLAFPEALFHQLLLAMVHADHETRVGAHRIFSVVLVPSSVCPQPSSSGTPMTKAAGIQRMLSRNVSVFSSSSALFEKLERKQNSLSEDSHTDGNVNDNSILNRLKSTYSRTTSTRKSAMISAESTDNKNSKVHNSSMMNRLKSSYSRATSAKKPQIPTTVEENTTNTSNKQQVLPIRLSSHQINLLLSSIWAQSIYPLNTSENFEAIAHTYSLVLLVARSKNSSHEALTQSFQLAFSLRSISLNENVKLQPSRRRSLFTLATSMIIFASKAYNILSLISIAKTTLTDRTVDPFLQLVNDSKLQAVIDTDRQPSKVYGSKEDDEDALKALSAIRLTENQSKESFATMIVQSLGKSSNESSILREQLLNDFSPDDACPLGAQLSAETTGNMYQSGLKEDKLPDMVDISLFTIDDDIPPCGLESQANSDPQQQPSQNLSLLSVDDILGSVSETTHQVGRISISTPFDMPYKEMALHCEALLMGKQQKMSTFMGTHPMQGYFSFRIPAPEYNQQKDESSNSSVQQTLPSSGNPFLDSNFDSNSYHTLPDTSPRLCATAYQHQAAFFQLPASRPKEAYLLLASLQNFRAVFMCIGHAKSTMEEVQESQTQSSLGQEEENEVITESSAFVKGEPAPEFSSNPPKVDSEVEVLHEKVSKQIIKEGHGQKPSKYSTCFFHYRAWAEKSQHKFEDTWQEQRPIEMVLGKEKKEMTGLGIGVASMKAGERALVRVGWELGYGEEGSFSFPNVPPKADLVYEVELIGFDETKEGKARSDMTVEERIGAADRRKMDGNALYQEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYEEAIGQCSIVLGEDENNVKALFRRGKARAALGQTDTAREDFLKASKYAPQDKAIAKELRLLAEHDKAVYQKQKEIYKGIFGPRPQPVPKPRNWLILIWQWLLSVFYGLVTLFKRQRHKSD 1434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00079 1434 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 1131 1224 IPR001179 GO:0003755
Gma12g00079 1434 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 1135 1227 IPR001179 GO:0003755
Gma12g00079 1434 Gene3D Tetratricopeptide repeat domain 1229 1360 IPR011990 GO:0005515
Gma12g00079 1434 SUPERFAMILY FKBP-like 1110 1226 - -
Gma12g00079 1434 MobiDBLite consensus disorder prediction 977 1007 - -
Gma12g00079 1434 ProSiteProfiles TPR repeat profile. 1332 1365 IPR019734 GO:0005515
Gma12g00079 1434 PANTHER PUTATIVE, EXPRESSED-RELATED 595 1044 - -
Gma12g00079 1434 PANTHER PUTATIVE, EXPRESSED-RELATED 1 596 - -
Gma12g00079 1434 SUPERFAMILY TPR-like 1239 1389 IPR011990 GO:0005515
Gma12g00079 1434 Gene3D - 1103 1228 IPR046357 GO:0003755
Gma12g00079 1434 PANTHER CYCLIN-LIKE PROTEIN 1 596 - -
Gma12g00079 1434 SUPERFAMILY ARM repeat 35 503 IPR016024 -
Gma12g00079 1434 SMART tpr_5 1332 1365 IPR019734 GO:0005515
Gma12g00079 1434 SMART tpr_5 1298 1331 IPR019734 GO:0005515
Gma12g00079 1434 SMART tpr_5 1247 1280 IPR019734 GO:0005515
Gma12g00079 1434 MobiDBLite consensus disorder prediction 578 638 - -
Gma12g00079 1434 PANTHER CYCLIN-LIKE PROTEIN 595 1044 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00079 Gma-Chr12 602665 617919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00079 1112 1400 Calmodulin-binding Proteins AT5G48570 32.095 6.01e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00079 K21842 - gmx:100816475 1967.97