Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00070 ATGTATCGAGGGGTTCCCGTTGCATGCAGGACGCGTAGCAAGCGGGGAAGGGTGGTTGGAAGTGGTTTAATAATGGGCCAGAAGAAGAAAAAGGTGCATGACCATGAACCTGTGTCTTTGAAGCGTGTAAGGGTATCTGAACGAGGTTTTGATTGTTCGGGAGGGCATGCTGGTGACCCTATTGTAATCGGTGACAGTGGTGATGATGTCAGTGAGGCTGAAGAGGGGTTGAGGCATACTGAGAAGAGGTTTCTGGTAGAAAAGGAATGGAAGAGCGAGGAGGGTAAAAGGTGTTCTGTATTTGTTGATAAAGTTGATAACTTTGGCAATGATGACTATGCTTGCGTACCTGAAAACCGGGTAATTTTGCCGGATGATTCATATGGGGATAATCAGAGTGAGAAGGAACATTGCGCGGATAAAAGTGGTTCAGATGATTCTTTTTTGTGTTTAACGGAGAGTGAGGATGGCGCCACCAGTGATGAAGATTTTCAGGTTGATTATGATGAGAATGATTGCTGCTCGAGCAGTGAGGACAGTGATTCTTCTTCTTATGATGATGATGAGAGAGGGGGATACAGCAAGACGGTGAAGGAGAGGGTGAGAAAGGTGGAGGGTGAAACTGAAAGtagtggagtttgcaaaagaaaaggtggaaggaaagataatgaagagggggagcaatggattggtgctgactgtgctagtgcaacctctagtaaatctgagatttataagcaggaagcaaggaatgcagcacagaaacatgaatcaaagagagtcaaaagtgccaatgttgatgcagaagtctttggtgatcactggaaaagttcaggttgctctatgccttctgaagctgaagcactagagcataggaagaaaagagatacaggtcatcaaagtgcgtcattgcagaaaaaaacagaatattcaactatgatcaagaAgaatcttgatgaccatgaaggaaaaaagcatcatcacgtcaaaggagattcagctaaagttgtgacaaaaaaagacaggaagggaagaaagcataaatatgggtttaatagcaataaatgtgagaaggtacgggtggtggatgatgaaactggtgacaaagatgagctgcatgaagtcctaaggatgccatctagaacaaaaaaccgatgttttaaattatttaatgaatgcTTTTGGGGCAAGAATGATTCTGTTAAAGATGATTCCAATCAGTTGGAAGAAAAGGATGATGATTTTGGTCAGGGTCAGACTAAGCCATTAGCTTCTAGGGAAACAATCCCTTTGGATTGGAACTTTATGAAGAAAGAACCTATTGAAAATTTGGAGTTTGAGAAGGAGTTAGATATCTTGTGGGGTGAAATGGATATGTTGCTTCGAGGTGAAGAAATTGGGTCTCAGGTTGATAATATTGGAACAAATGAAGCAAGAGAAAATGAAGAAAATTCAGCGTCGCAGTGCAAGCATGATACTATTTTTAATGAGGAAATTGGGATATACTGCAGATGGTGTGGTTGGATTGCCACTGAAATCAAATATATCACTCCACCATTTGTGGATTCTGAAAGATGTTGCAGAAGGGTGTCATCTGGTGGAGGGAACACCTCACAGTTTGATGGGGATCTGTTTAATGATCCTGGTGATGACTCAGAGGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATAAAACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAATTTGGCAGGAACCACTGACCTTGCCAAATTGAAGAGGGTTGACCCATGTAGTGAAGGTGGGTGCATTGTTTCTCATGCTCCTGGAACAGGAAAGACAAGGTTGACCATGGTTTTTCTTCAGACATATTTGCAATCGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACATGGGAAGATGAGTTAAGGAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATTCTGAATTATCGGGAAAAGAGAAACTCATTAATGAAGTTGACTGGTCTGGCAATCAAAAGCAGAATAAGGATGCCATACGTATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGTTAGCAGGATCCACGGCTGAAGGTGATGGGAAAAAAGAGAAGAAAAATAATAAGATGAAAAAAAAGAAGAAACGTGCAAGGCCAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTACTTGATGAAGGGCACACTCCTCGGAATCAGaatagttatatttggaaggttctttctgaaagtagaactaagaagcgaatccttctttcggggacacctttccaaaacaattttttggaacttTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACAAATGCAGGAAAGGAAAGATGTGAGCTGGGATTGGGAACCTGTTTCGTCTGGAAATACAGCTGATGAGAAAATAAAACTGCTAAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAAAAGAACCTTCCTGGGTTGAGAGATTGTGTGCTGGTTTTGAAGCCAGACATTTTGCAGCAAGAAACTCTAGAGAGCATTGAATATTCTCAAAGTGCACTGAACTTTGAACACAAGTTGGCCTTGGTCTCTGTCCATCCATCCCTTTTCCTCAACTGCTCTCTGTCAAAAAAAGAAGAATCTGTTGTTGACAAGGGTAAGTTGGAAAAGCTTAGATTGAACCCTTATGGAGGGGTCAAAACCAAATTTCTGTTTGAGTTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTCATTTTCAGCCAATTCATTGATACCTTATGCTTAATTAAGGACCAACTTGAGTCAGCCTTCAATTGGTCTGTGGGGACAGAAGTGCTGTATATGTATGGAAAGCTTGACCATAAGCAAAAACAGTCCCTCATTCGTAGTTTCAATGATTCAAATAGCCAAGCAAAGGTGCTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGAGCTTCAAGGGTTGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGTCGAGCATATAGACTTGGACAAAAGAGGGTTGTTTTCACATATCATCTTCTTGCACAGGGCACCCCTGAATGCACAAAATATTGTAAACAAGCAGAAAAGAACCGGTTATCTGAACTTGTTTTCTCAAATAGAAATGCTGAAAGTCATAAGCTCAAGAGTAGTGGAGTAATGCTTGAGGATATTGAGGATAGAGTTCTTGATCTCATGGTTCAGCATAAAAAACTCAAGGATATGTTTGGTGAATGTCTGGTTCAACCAAAGGAGAGATATTTGGAGACTTTGGGCCCTTGA 3501 0.3365 MYRGVPVACRTRSKRGRVVGSGLIMGQKKKKVHDHEPVSLKRVRVSERGFDCSGGHAGDPIVIGDSGDDVSEAEEGLRHTEKRFLVEKEWKSEEGKRCSVFVDKVDNFGNDDYACVPENRVILPDDSYGDNQSEKEHCADKSGSDDSFLCLTESEDGATSDEDFQVDYDENDCCSSSEDSDSSSYDDDERGGYSKTVKERVRKVEGETESSGVCKRKGGRKDNEEGEQWIGADCASATSSKSEIYKQEARNAAQKHESKRVKSANVDAEVFGDHWKSSGCSMPSEAEALEHRKKRDTGHQSASLQKKTEYSTMIKKNLDDHEGKKHHHVKGDSAKVVTKKDRKGRKHKYGFNSNKCEKVRVVDDETGDKDELHEVLRMPSRTKNRCFKLFNECFWGKNDSVKDDSNQLEEKDDDFGQGQTKPLASRETIPLDWNFMKKEPIENLEFEKELDILWGEMDMLLRGEEIGSQVDNIGTNEARENEENSASQCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVDSERCCRRVSSGGGNTSQFDGDLFNDPGDDSEAVWSHNEGTVWDLIPDIKQSLYPHQQEGFEFIWTNLAGTTDLAKLKRVDPCSEGGCIVSHAPGTGKTRLTMVFLQTYLQSFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNSELSGKEKLINEVDWSGNQKQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGSTAEGDGKKEKKNNKMKKKKKRARPREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTKKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRQMQERKDVSWDWEPVSSGNTADEKIKLLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDILQQETLESIEYSQSALNFEHKLALVSVHPSLFLNCSLSKKEESVVDKGKLEKLRLNPYGGVKTKFLFEFIRLCDAVNEKVLIFSQFIDTLCLIKDQLESAFNWSVGTEVLYMYGKLDHKQKQSLIRSFNDSNSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKRVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESHKLKSSGVMLEDIEDRVLDLMVQHKKLKDMFGECLVQPKERYLETLGP 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00070 1166 MobiDBLite consensus disorder prediction 129 143 - -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 125 144 - -
Gma12g00070 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 964 1132 IPR001650 -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 725 747 - -
Gma12g00070 1166 Gene3D - 883 1153 IPR027417 -
Gma12g00070 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 818 IPR014001 -
Gma12g00070 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 1123 IPR027417 -
Gma12g00070 1166 SMART helicmild6 991 1076 IPR001650 -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 312 339 - -
Gma12g00070 1166 Pfam Helicase conserved C-terminal domain 969 1076 IPR001650 -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 286 302 - -
Gma12g00070 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 844 IPR027417 -
Gma12g00070 1166 Pfam SNF2-related domain 585 903 IPR000330 GO:0005524|GO:0140658
Gma12g00070 1166 SMART ultradead3 570 826 IPR014001 -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 248 269 - -
Gma12g00070 1166 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1162 IPR044567 GO:0080188
Gma12g00070 1166 MobiDBLite consensus disorder prediction 186 228 - -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 160 185 - -
Gma12g00070 1166 Coils Coil 1128 1148 - -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 160 350 - -
Gma12g00070 1166 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1162 - -
Gma12g00070 1166 CDD SF2_C_SNF 933 1087 - -
Gma12g00070 1166 Gene3D - 552 862 IPR038718 -
Gma12g00070 1166 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00070 Gma-Chr12 516222 520335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00070 974 1122 RAD5 or RAD16-like Gene Family AT5G43530 36.913 5.38e-19 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gma12g00070 SNF2_N 9.8e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00070 K10875 - gmx:100812737 2176.75