Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00064 ATGAAACCTTTTCTTCTCTTTCTCATCACATTCTCCTTCCTCTGCCAAACACACCTACTCCTAGTTCTCTCTGCCACAACCCCCTTGTCCCTCCAACTCATCGCCCTCCTCTCCATAAAATCGTCCCTCCTAGACCCTCTCAATAACCTCCATGACTGGGACCCCTCCCCCTCCCCCTCCAATCCCCAACACCCAATATGGTGTTCCTGGAGAGCCATCACATGCCACTCCAAGACATCACAAATCACCACCCTAGACCTCTCCCACCTCAATCTCTCCGGCACTATCTCCCCCCAAATCCGCCACCTTTCCACCTTAAACCACCTTAACCTCAGTGGAAATGACTTTACCGGCAGTTTCCAATACGCCATTTTCGAACTAACAGAACTGAGAACACTAGACATCAGCCACAATTCCTTCAACTCAACCTTCCCACCGGGTATATCAAAACTCAAGTTCCTCAGGCACTTCAACGCCTACAGCAACAGCTTCACCGGCCCTCTCCCCCAAGAGTTAACCACCCTTCGTTTCCTCGAACAACTGAACCTGGGCGGAAGTTACTTCAGCGACGGGATTCCACCAAGTTACGGCACTTTCCCGAGACTCAAGTTTCTAGACATAGCCGGTAATGCCTTGGAAGGTCCACTCCCTCCCCAACTAGGCCACTTGGCTGAACTAGAACACTTGGAAATTGGATACAACAATTTCTCAGGAACACTACCCTCAGAactcgcattgctctataacctcaaatacttggacatctcaagcactaacatttcagGGAACGTGATTCCGGAGCTGGGAAACCTCACCAAGCTGGAGACACTTCTGCTGTTCAAGAACAGGTTAACAGGGGAAATACCATCAACCATAGGAAAATTGAAGTCCCTTAAAGGCCTTGACCTCTCAGACAACGAACTCACTGGGCCAATCCCCACTCAAGTCACCATGCTAACCGAACTAACCACGCTCAACCTAATGGACAACAACCTCACAGGAGAAATACCACAGGGAATTGGAGAACTACCTAAGCTCGACACTCTGTTCCTCTTCAACAACTCACTCACTGGAACCCTCCCTCAGCAACTTGGCTCCAACGGCTTACTGCTGAAACTCGACGTTTCCACAAACTCACTCGAAGGTCCAATCCCTGAAAATGTGTGCAAAGGTAACAAGCTCGTCAGACTCATACTCTTCCTCAACAGATTCACCGGTTCTCTCCCACCGTCCCTTTCCAACTGCACCTCACTCGCTAGGGTTCGCATCCAAAACAATTTCCTCAGCGGTTCAATCCCCGAAGGCCTCACGCTCCTCCCTAACCTAACGTTTCTAGATATCAGCACCAACAACTTCCGTGGTCAAATTCCGGAACGCTTAGGTAACTTGCAGTACTTCAACATCTCCGGAAACTCCTTCGGAACCTCACTACCGGCCTCTATTTGGAATGCTACTAATCTTGCGATCTTCTCTGCTGCTTCGTCGAACATCACTGGTCAAATTCCTGATTTCATAGGGTGTCAGGCATTGTATAAGCTCGAACTGCAGGGAAATTCCATCAACGGTACGATTCCTTGGGACGTTGGACACTGCCAGAAGTTGATTTTACTGAATCTGAGTCGAAACTCACTCACCGGTATCATTCCCTGGGAAATCTCAGCTCTCCCTTCCATCACCGACGTTGATCTCTCTCACAATTCACTCACCGGAACCATTCCTTCGAACTTCAACAACTGCTCAACGCTCGAGAATTTCAACGTCAGCTTCAACTCCCTCACCGGTCCAATTCCGTCGACCGGCATTTTCCCGAACCTACATCCTTCCTCCTACTCCGGCAACCAGGGCCTATGCGGCGGCGTGTTGGCCAAACCCTGCGCAGCCGACGCCCTCTCCGCCGCCGACAACCAGGTCGACGTCAGGCGACAGCAGCCGAAGCGAACTGCCGGTGCAATTGTGTGGATCGTCGCGGCGGCGTTCGGAATCGGCCTCTTCGTGCTCGTCGCCGGAACGCGCTGCTTTCACGCGAACTACAACCGGCGTTTCGGCGACGAGGTGGGACCGTGGAAGTTAACGGCGTTCCAGCGTTTGAATTTCACGGCGGAGGACGTGCTGGAGTGTTTGTCGATGTCCGATAAGATACTGGGGATGGGATCCACGGGAACGGTTTACAGATCGGAAATGCCAGGTGGCGAGATCATAGCGGTTAAGAAGCTGTGGGGGAAGCAGAAGGAGAATATCAGAAGGAGGAGAGGGGTTCTGGCAGAGGTGGAGGTGTTGGGAAACGTGAGGCACAGGAATATCGTGAGGTTGTTAGGGTGCTGCAGCAACAAGGAGTGCACCATGCTGCTATACGAGTACATGCCCAATGGAAACTTGGATGATTGGTTGCATGGCAAAAATAAAGGAGATAATTTGGTCGCCGATTGGTTCACTAGGTATAAGATCGCCTTGGGCGTGGCTCAGGGAATCTGCTATCTTCACCACGACTGTGATCCCGTCATCGTGCATCGCGATCTCAAACCTAGTAACATATTATTGGACGCTGAGATGGAGGCCAGAGTCGCAGATTTTGGTGTCGCCAAGTTGATTCAGACCGACGAGTCCATGTCTGTCATTGCCGGTTCCTATGGCTACATTGCTCCAGaatatgcttacacccttcaagtcgatgaaaagagtgacatttacagctacggagtggtgttgatggagatcctaaGTGGAAAACGTTCGGTTGATGCAGAATTTGGCGATGGGAACAGCGTTGTTGATTGGGTTAGGTCTAAGATAAAGTCTAAAGATGGCATTGATGACATATTGGACAAGAATGCAGGGGCAGGGTGCACCTCAGTGAGAGAAGAGATGATACAAATGCTTAGAATTGCATTGCTTTGCACCAGTAGAAACCCAGCGGATAGGCCTTCTATGAGGGATGTTGTGTTGATGCTGCAAGAGGCCAAGCCAAAGAGGAAATTGCTTGATAGTGTTCTAGGTCGATGTGCTGGGGACAATGTGGTTGTTGGTGGTGACATTCCTTTGCCACAAAAGCCAATTGCGGATCAATGTTAA 3069 0.4858 MKPFLLFLITFSFLCQTHLLLVLSATTPLSLQLIALLSIKSSLLDPLNNLHDWDPSPSPSNPQHPIWCSWRAITCHSKTSQITTLDLSHLNLSGTISPQIRHLSTLNHLNLSGNDFTGSFQYAIFELTELRTLDISHNSFNSTFPPGISKLKFLRHFNAYSNSFTGPLPQELTTLRFLEQLNLGGSYFSDGIPPSYGTFPRLKFLDIAGNALEGPLPPQLGHLAELEHLEIGYNNFSGTLPSELALLYNLKYLDISSTNISGNVIPELGNLTKLETLLLFKNRLTGEIPSTIGKLKSLKGLDLSDNELTGPIPTQVTMLTELTTLNLMDNNLTGEIPQGIGELPKLDTLFLFNNSLTGTLPQQLGSNGLLLKLDVSTNSLEGPIPENVCKGNKLVRLILFLNRFTGSLPPSLSNCTSLARVRIQNNFLSGSIPEGLTLLPNLTFLDISTNNFRGQIPERLGNLQYFNISGNSFGTSLPASIWNATNLAIFSAASSNITGQIPDFIGCQALYKLELQGNSINGTIPWDVGHCQKLILLNLSRNSLTGIIPWEISALPSITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSTGIFPNLHPSSYSGNQGLCGGVLAKPCAADALSAADNQVDVRRQQPKRTAGAIVWIVAAAFGIGLFVLVAGTRCFHANYNRRFGDEVGPWKLTAFQRLNFTAEDVLECLSMSDKILGMGSTGTVYRSEMPGGEIIAVKKLWGKQKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDWLHGKNKGDNLVADWFTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDAEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDAEFGDGNSVVDWVRSKIKSKDGIDDILDKNAGAGCTSVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLLDSVLGRCAGDNVVVGGDIPLPQKPIADQC 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00064 1022 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 3 1009 - -
Gma12g00064 1022 Pfam Leucine rich repeat 509 568 IPR001611 GO:0005515
Gma12g00064 1022 Pfam Leucine rich repeat 273 332 IPR001611 GO:0005515
Gma12g00064 1022 Pfam Protein kinase domain 711 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00064 1022 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Gma12g00064 1022 Gene3D Transferase(Phosphotransferase) domain 1 787 996 - -
Gma12g00064 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 834 846 IPR008271 GO:0004672|GO:0006468
Gma12g00064 1022 ProSiteProfiles Protein kinase domain profile. 708 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00064 1022 SMART serkin_6 708 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00064 1022 SUPERFAMILY Protein kinase-like (PK-like) 711 983 IPR011009 -
Gma12g00064 1022 Gene3D Ribonuclease Inhibitor 75 340 IPR032675 -
Gma12g00064 1022 Gene3D Phosphorylase Kinase; domain 1 689 786 - -
Gma12g00064 1022 Gene3D Ribonuclease Inhibitor 341 632 IPR032675 -
Gma12g00064 1022 SUPERFAMILY L domain-like 313 617 - -
Gma12g00064 1022 SMART LRR_typ_2 555 578 IPR003591 -
Gma12g00064 1022 SMART LRR_typ_2 319 341 IPR003591 -
Gma12g00064 1022 SMART LRR_typ_2 460 484 IPR003591 -
Gma12g00064 1022 SMART LRR_typ_2 343 367 IPR003591 -
Gma12g00064 1022 SMART LRR_typ_2 199 223 IPR003591 -
Gma12g00064 1022 SMART LRR_typ_2 127 151 IPR003591 -
Gma12g00064 1022 SMART LRR_typ_2 271 295 IPR003591 -
Gma12g00064 1022 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 3 1009 - -
Gma12g00064 1022 Pfam Leucine rich repeat N-terminal domain 32 75 IPR013210 -
Gma12g00064 1022 SUPERFAMILY RNI-like 85 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00064 Gma-Chr12 482566 486440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00064 4 998 Receptor kinase-like Gene Family AT1G08590 42.871 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gma12g00064 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00064 - - gmx:100809695 2013.42