Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00053 ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCCCATGCTGGGACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTGGCCATGGGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGCCGTGATAAGGTAGTATATCAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCGGAATTTCTGCCCATGATTAATGAGGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGGATTTGGTGGGGCAACATGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCAGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCGGCACCAAAAGAAAGCAACGCAATTTACTCTCTTCGTGATCCATCAGAGGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAG 1173 0.4109 MDLKSNHTPVLTDAAPVTKSRLGVHSSLLPYSHAGTTFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDVGHGFASSDSETAGAYFSWLLKYPSALASFDQIMNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLNSLEECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQHVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDQTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSTLKSLI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00053 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 385 IPR044651 GO:0004805|GO:0005992
Gma12g00053 390 TIGRFAM T6PP: trehalose-phosphatase 118 379 IPR003337 GO:0003824|GO:0005992
Gma12g00053 390 SUPERFAMILY HAD-like 122 381 IPR036412 -
Gma12g00053 390 Coils Coil 230 250 - -
Gma12g00053 390 Pfam Trehalose-phosphatase 124 369 IPR003337 GO:0003824|GO:0005992
Gma12g00053 390 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 385 - -
Gma12g00053 390 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 342 IPR006379 -
Gma12g00053 390 CDD HAD_TPP 122 373 - -
Gma12g00053 390 Gene3D - 220 388 IPR023214 -
Gma12g00053 390 Gene3D - 121 214 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00053 Gma-Chr12 401248 403763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00053 115 378 Trehalose Biosynthesis Gene Families AT1G70290 25.714 2.94e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00053 K01087 - gmx:100819495 783.097