Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma12g00046 | ATGGCATTGCAGCACGGTGTGATTGGAAGTTCAAGATCTTCCCAAAATCTCTTTAGAATAGTTGTATCCCTTCTACTCATCTTAACCTTTCTCCAATTAGCAGCATCTGCATCTGCATCCACATCCACAACTGATTCCCTCAAAGCCTACAAAAAGTTCATAAAAGACAAGTGCAATTCAACCACTTTCCCAAAGGTTTGCTACAAGTCTCTGTCCCCTTATGCATCAAAAATAAAAAGAAACCGCGTAACACTCACCAAAGTGTCTATTTACGTGGCTCTAAAAGCAGCCAAGATTGCATACAGCACACTGACGAAGCTTTCCAAATCGAAGGGGAAGCTAACACATGGTGAAGCTTCGGTGATTGCTGATTGCCGAGAGAACATTGATGAGACGTTGGATCTGCTTTCACAATCTTCTGATGAGCTTGCAAATTTGAATGGCACATCTTCTGCTCATGACCAATTCCAATGGGACAACATAAAGACATGGATGAGTGCTGCCATAACAGATGAGGGTACATGCACCGATGAGTTTGACGAAATACAAGTGCGCCCTTCACTGCAGAAGAAGATCAAAACCACCGTTTATAACCTTTCTTGGTTCACTATCAATGCCTTGGCCCTCGTCAATAGGCTTTACTAA | 645 | 0.4264 | MALQHGVIGSSRSSQNLFRIVVSLLLILTFLQLAASASASTSTTDSLKAYKKFIKDKCNSTTFPKVCYKSLSPYASKIKRNRVTLTKVSIYVALKAAKIAYSTLTKLSKSKGKLTHGEASVIADCRENIDETLDLLSQSSDELANLNGTSSAHDQFQWDNIKTWMSAAITDEGTCTDEFDEIQVRPSLQKKIKTTVYNLSWFTINALALVNRLY | 214 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma12g00046 | 214 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 51 | 213 | IPR035513 | - | |
| Gma12g00046 | 214 | PANTHER | PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR | 12 | 214 | - | - | |
| Gma12g00046 | 214 | SMART | PMEI_2 | 49 | 209 | IPR006501 | GO:0004857 | |
| Gma12g00046 | 214 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 23 | 212 | IPR006501 | GO:0004857 | |
| Gma12g00046 | 214 | CDD | PMEI-like_3 | 58 | 213 | - | - | |
| Gma12g00046 | 214 | Pfam | Plant invertase/pectin methylesterase inhibitor | 52 | 209 | IPR006501 | GO:0004857 | |
| Gma12g00046 | 214 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 12 | 214 | - | - | |
| Gma12g00046 | 214 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 48 | 213 | IPR035513 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma12g00046 | Gma-Chr12 | 347441 | 348243 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma12g00046 | 54 | 213 | Carbohydrate Esterase | AT1G53830 | 28.750 | 4.85e-15 | 71.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma12g00046 | - | - | gmx:100527377 | 394.43 |