Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00034 ATGGTCGTCAACGAGAGACCCTCCAAGAGGATGAAGAGAAGGGTCACAGCTGATCTTCGTGATTTTCTTACTTTTCCCGAGCCTGGCGTCACTGCCTCCGGCCAACCTTTCCGGAACTGTGTACAGCGGTTCCTCTCTGACCATGCGCGAATCACTTTCCCTCCCTCGCTCTTTCCGTCACTCATGACGTGGCAGATCTTGTTCCGTGTCGGAGACATCGTCAGTGGGCCCGATCTCTCGCCGGCTATGGTCACTCTCGATATTGTTGAGGAGGACGTCACTCGTTGCCGTACTTCCGTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAACGATACCATTTCATAATAAGGGCTGCGAGTGATGCCGTCGAAGCATATCAAAGACCAAGACCATGTTCAAGATGTGGAAATCTTCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGCCATCACCGTTGATGACCTTGAGGATTGGGTGTATCTTCAGATTGAAGATAACACCCATCTTCTGCATGGTGTCGTGCATGCCAATGGTTATGGGCACCTGCTCACTCTCAATGGAAGAGAAGGTGGCTCGAAGCTTCTCTCTGGATTTGATATCATGAATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGTGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAATCACCAACGGGCATTCCTGGTATGGCAATTGGGGTTATCAATTTGGAACTGGCAGCTATGCTCTTACCCAAAATGCTTACAAGAATGCAGTGAATACCCTGTCGAGCATGCTCTTGTCCTCATTTTCATTCCATGGTCGGGGACCAAGAAGCCGCCTGGAGTGTGTCATTTCTCTTTACCAGTCTTTGGCAGAAACTGAACTTTTGACGATTAAAGATCTATTTTCCTTTTTGTTGACATTGATTCTTGAATGTCGTAAGCCAGTGGCCATGAGGACATCTAAGCAGACCAGTAACTTATTGTGTGCTTGGACGGGAAATGATGTTGAAGACGTGCAACATGCTTTGATCAAGGTTTTGCTTGCATCGGGTGTCTGTACTGAGGCCAAATGGGTGACAAGGCGTACTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAACTTCTAGACTACTGTCTTAAGCACTTGCCGGGAAAATTAGCTGCCAATGGAATGATAGTTTGTTCACGATGCAATCCAATTTCCAGTGCCATCGAATTCAGGTTAGAACCTTGGTGTAATGGATTAAGCACAAATTCAGGCTATCCAACAGATGCTCAACTGATCTCTGATTTGACATTTTTATTTGATTCAATTATTCACCCTGACAAAATGGTGTGCTACAGACCCAAGAATATGAGGAAAAGGGTGGCGGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTCATGAAGGATTACAAGCCATATGAAATGGCTGTTGAACTGCCTTCAGTCATTAGGCTGTTGTGTCATGTGGAGCTTTCTGATCAGCCCAAGGATGATCCATCCCCACCGCCAGAGCTAATTGTGCTTCCTTTGAATGCTACTGTTGCTGACCTCAAGAGTGAAGCCACTAGTGCTTTTCAAGAGGTATATGCAATGTATAAGAGGTTTCAAGCTGAGGAACTCCTAGGGTATGGATCAATCAGTGATTCGCTCACCATAAAGTTCTTGCTTGGAACAAGTGGATCAATTCAAATTCAAGGTAGATGTCCAGCTAAACATGGGCTAAGCCGATTCCGAATGGAACGAGGAACAGAGGTGTGGAAGGTGGATTGCATTTGCGGGGCTAAGGATGACGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGTGTTTGGCAGCACACAAGATGTGCTGGAATTGATAATAATACTGATGGAATGCCGTCTAAGTTTGTTTGTATGAGATGTGTCAACTCGTACCGTGAGGAGACTAAAAAATTACCAACACCTGGTGAGGAAGCTAACGAGACCTGTAAATTCACCACATCTTGCAGAGATGAGGCAGTAGCAAGGGAGTGTGCAACGGTTTCATGTAACATAGCTGTGAATTTTGGTGTACGTTGA 2133 0.459 MVVNERPSKRMKRRVTADLRDFLTFPEPGVTASGQPFRNCVQRFLSDHARITFPPSLFPSLMTWQILFRVGDIVSGPDLSPAMVTLDIVEEDVTRCRTSVYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEAYQRPRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHANGYGHLLTLNGREGGSKLLSGFDIMNFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITNGHSWYGNWGYQFGTGSYALTQNAYKNAVNTLSSMLLSSFSFHGRGPRSRLECVISLYQSLAETELLTIKDLFSFLLTLILECRKPVAMRTSKQTSNLLCAWTGNDVEDVQHALIKVLLASGVCTEAKWVTRRTLKGAVCRGVSSPELLDYCLKHLPGKLAANGMIVCSRCNPISSAIEFRLEPWCNGLSTNSGYPTDAQLISDLTFLFDSIIHPDKMVCYRPKNMRKRVADSARKLLDCKQFMKDYKPYEMAVELPSVIRLLCHVELSDQPKDDPSPPPELIVLPLNATVADLKSEATSAFQEVYAMYKRFQAEELLGYGSISDSLTIKFLLGTSGSIQIQGRCPAKHGLSRFRMERGTEVWKVDCICGAKDDDGEKMLACDTCGVWQHTRCAGIDNNTDGMPSKFVCMRCVNSYREETKKLPTPGEEANETCKFTTSCRDEAVARECATVSCNIAVNFGVR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00034 710 Pfam PHD-finger 614 661 IPR019787 -
Gma12g00034 710 ProSitePatterns Zinc finger PHD-type signature. 614 659 IPR019786 -
Gma12g00034 710 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 683 - -
Gma12g00034 710 CDD PHD_MMD1_like 613 659 - -
Gma12g00034 710 SMART PHD_3 613 660 IPR001965 -
Gma12g00034 710 ProSiteProfiles Zinc finger PHD-type profile. 611 662 IPR019787 -
Gma12g00034 710 ProSitePatterns Uncharacterized protein family UPF0054 signature. 182 192 IPR020549 -
Gma12g00034 710 SUPERFAMILY FYVE/PHD zinc finger 608 664 IPR011011 -
Gma12g00034 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 683 - -
Gma12g00034 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 599 666 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00034 Gma-Chr12 272121 275466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00034 80 659 PHD Transcription Factor Family AT5G22260 27.715 1.87e-82 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gma12g00034 PHD 1.7e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00034 - - gmx:100780558 1340.87