Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00029 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACGACATACACTAAGGTGTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCCGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTACGGATTTGTTACTTTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATCCTGCTCCTGTAATCGACGGCAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGCAGGGAGGAACTTTAGAGTAATGGGTTCTTTCCAGACAGGATTTGGAGGGGGAGTGGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTACGCCATCCAGCAAGGGataccttataatgtttatggGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGACCTGCTGCAGCTGCAGGAGGGATGATGAGCGGTGGTGCAGCGTTCTACCCATATCTGCAGTACGGAGGAGAAGGGAGTGGCGGCGGCGGTACTTCCGGACAGGGTTATGGTGTGAACTACCCTCCTCAGGCTCATCTTTTTCAGTATTCTCCCATTGCTTCCACCGCTGGCTATGCCCAGCACTATGGTACACCTACTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTCTGTTTTGCTGTGCCGCAGGCGTGA 804 0.4988 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDPAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPAAAAGGMMSGGAAFYPYLQYGGEGSGGGGTSGQGYGVNYPPQAHLFQYSPIASTAGYAQHYGTPTMSLAPSPALQSVCFAVPQA 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00029 267 Gene3D - 7 112 IPR012677 -
Gma12g00029 267 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Gma12g00029 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Gma12g00029 267 PANTHER OS01G0876800 PROTEIN 1 262 - -
Gma12g00029 267 PANTHER BOULE-RELATED 1 262 IPR037366 GO:0003729
Gma12g00029 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Gma12g00029 267 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gma12g00029 267 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00029 Gma-Chr12 224231 230453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00029 12 92 C2H2 Transcription Factor Family AT2G19380 44.444 2.59e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00029 - - gmx:100779046 495.352