Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma12g00028 ATGGATATAGATTACTCATTCAATGCCAATACATGTGAGATAGTAGAAGCAAGAGAAGAGATCATTTGTAAGTTCAAAATAGATGAAAAGCCTGAGAGTAGTTGTGCCCACAAATCAGGCAAAAAGTATTCTATAGAGGATGATATCAATCGTCTTTTGCAGGCTATTGATATTGAAAATTCAGCTAGAGCTCTTAATACACCTGATTCACAAAAGAGTGCTCTTAAAAAGCCTATAAAAATCACTTCATCTCAGACATCAGGAATTGGCCTCTCAGAACCTGTAAGTTTAAAGCAGGCATTTAGAGGGTTGTGCATCTCACATGCATCAAAAATGGCTGCATTGAAGCGATTATCAAAGCCATCCACTTCGTCAAGAGTATCAAAGGTTGGAATATCTAGACCTTCTAATGAATTAGGATGCAATGACAATAATGAGATATCAAATTCAAGTGCTCATCACTCTCCTTCTTTTGTTAATGCAACAAACCCAAAACCAATGTCAACCAGATCATCATATCAAAACCAAATTGGCCCTCTTGCATCAGAAGTTCAGGGTGAAAAGCTAGTCACGAGGCTTGAACAACATGTACTAGCAAATTCAACATCTGTTGTTGCCTATTCTAGTAATGAAGTGTTGGAGCTAGATATTAGACTTAAAACGTTTTGTGATTCCTCCAGAAAAGATTCTCTCGGTTCTTCAATGCCAAATAAGGGAATGGAAGCAAACTTAAATTCTCCACCTAGTTCTGGCACAGGTAATGGGGTGGAGAAACCCACAAGTAGTATTACATCTTTCGCAAAGCCAATATTTAGGGACAAGAACTTTCATAAAAATAAAGTGAAGCAAGATTTATGTTCTTCGTCGAGCTGCTCCAATCTATGTACCAGAAACATTGGCAATGATTTGGCTTTCTGTACAAGTAATTTGAACAAGGTGACTGATAACTCTGATTCAAAGAATGAAATGAAAGAAAAAAGGAAGTTGTCATTCAAACATTCAAACCATAGCATTGAAGTTTACTCAGTTAATGCTAGCATGGATTCAAGCAAACATGGTTTCTGTTTGACTGACAAAAAGAGAACTAGGTTTCTAGTGACAAAATTTGATGAGAAATCAAGATCAAAAGAGAAGGGTGAACTCTCACAAAGTCCCAAAAGTAGCACTAGTGATTATCGTAGTATCAGTAAGGAGAAAAATCTAAGTGGTTCCAGTTACAACGGGCACAGGCCTCACATGTCAAAGCACGCAAGGTGGGAAGCAGTTCATGTTATTGAGCAGCAACATGGTCATTTAAGTTGGAGGAACTTCAAGGTCCTCAAAAGACTTGGTCGTGGGGACATTGGAATTGTTTATCTTGCTCAACTAATTGGTACGAGTAGCCTTTTTGCAGTAAAAGTGATGGAGAATGACATTTTAGTAAACCAGAAGAAAACATCGAGGGCTCAAATTGAAAGAGAAATATTGCAAATGCTAGATCATCCGTTTCTTCCTACACTTTATGCCCATTTTACAACGGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCCGGTGGAGATTTGCATGTGCTACGCCAAAGGCAACCATCTAAGAGTTTCTCAGAACATGCAACCAGCTTGCCTAGATGCTACGATAAGCATGCTTTGACAGAAAAATTGACTTACGTTGAGTTTACAAGATGTTGGGTTAATCCAGTGTTGGTCAAGTCACCTTCACCAAGTGTGGATCCAACAAAGATGTCTAGTTCTTGTGTAAAGGCTATCTGCATGCACCCTTTCTGTCTTCAACCAAATTGGCATGTCTCCTGTACTCCTATTTTATTATCAGGTGGAGCAAAGCCTCAAAAAACTAAGGCTGAAATAAGTGGTCAGGTTGGTCCACTGCCACAGCTTATAGTGGAGCCTATCAATGCTCGATCAAACTCGTTTGTTGGAACCTATGAATACCTTGCTCCGGAAATCATAAAAGGTGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTTGGTATACTATTGTTTGAACTTATATATGGTATAACTCCATTCAAGGGCCCATCATATGAAGATACATTAGCCAATGTTGTGTCACAGAGCCTTAAGTTCCCAGATACTCCTATAGTGAGTTTTCGAGCAAGAGATTTGATCAAACGATTGTTGATAAAAGACCCTAAAAGTCGATTAGGTTTTGTAAAAGGTGCTACTGAGATAAGGCAGCATTCCTTCTTTGAAGGCCTCAATTGGGCTCTTATACGTTGTGCACCACCACCCAAGCTCCTCAAATTTTGTGATTTTGGAACTAGTCTTCAATCCATGAAGAATGCCATCGATTCACAAGATTGTGAAGAGTTTGACATGTTTTAG 2367 0.3904 MDIDYSFNANTCEIVEAREEIICKFKIDEKPESSCAHKSGKKYSIEDDINRLLQAIDIENSARALNTPDSQKSALKKPIKITSSQTSGIGLSEPVSLKQAFRGLCISHASKMAALKRLSKPSTSSRVSKVGISRPSNELGCNDNNEISNSSAHHSPSFVNATNPKPMSTRSSYQNQIGPLASEVQGEKLVTRLEQHVLANSTSVVAYSSNEVLELDIRLKTFCDSSRKDSLGSSMPNKGMEANLNSPPSSGTGNGVEKPTSSITSFAKPIFRDKNFHKNKVKQDLCSSSSCSNLCTRNIGNDLAFCTSNLNKVTDNSDSKNEMKEKRKLSFKHSNHSIEVYSVNASMDSSKHGFCLTDKKRTRFLVTKFDEKSRSKEKGELSQSPKSSTSDYRSISKEKNLSGSSYNGHRPHMSKHARWEAVHVIEQQHGHLSWRNFKVLKRLGRGDIGIVYLAQLIGTSSLFAVKVMENDILVNQKKTSRAQIEREILQMLDHPFLPTLYAHFTTDKLSCLVMEYCPGGDLHVLRQRQPSKSFSEHATSLPRCYDKHALTEKLTYVEFTRCWVNPVLVKSPSPSVDPTKMSSSCVKAICMHPFCLQPNWHVSCTPILLSGGAKPQKTKAEISGQVGPLPQLIVEPINARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILLFELIYGITPFKGPSYEDTLANVVSQSLKFPDTPIVSFRARDLIKRLLIKDPKSRLGFVKGATEIRQHSFFEGLNWALIRCAPPPKLLKFCDFGTSLQSMKNAIDSQDCEEFDMF 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma12g00028 788 MobiDBLite consensus disorder prediction 226 260 - -
Gma12g00028 788 SUPERFAMILY Protein kinase-like (PK-like) 639 766 IPR011009 -
Gma12g00028 788 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 8 539 - -
Gma12g00028 788 SUPERFAMILY Protein kinase-like (PK-like) 412 536 IPR011009 -
Gma12g00028 788 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 561 788 - -
Gma12g00028 788 ProSiteProfiles Protein kinase domain profile. 437 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00028 788 MobiDBLite consensus disorder prediction 382 409 - -
Gma12g00028 788 Pfam Protein kinase domain 437 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00028 788 Pfam Protein kinase domain 641 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma12g00028 788 MobiDBLite consensus disorder prediction 117 173 - -
Gma12g00028 788 Gene3D Phosphorylase Kinase; domain 1 392 573 - -
Gma12g00028 788 PANTHER FLIPPASE KINASE 1-RELATED 561 788 - -
Gma12g00028 788 MobiDBLite consensus disorder prediction 375 413 - -
Gma12g00028 788 Gene3D Transferase(Phosphotransferase) domain 1 639 753 - -
Gma12g00028 788 PANTHER FLIPPASE KINASE 1-RELATED 8 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma12g00028 Gma-Chr12 219247 222531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma12g00028 9 767 AGC Kinase Gene Family AT3G52890 38.706 1.31e-159 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gma12g00028 Pkinase 2.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma12g00028 - - gmx:100802592 1508.04