Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02572 ATGCGAACTTCATGGGCTGATTTGGCTGCCAATTCGGCGCCTGAAAATGCGGGAACCTCTAACTCCACAGCTCCTTCGCGGCCGGTTTATGTGCCTCCGCATCTGAGAAACCGTGGACCATCGGAATCCCCTGCTCCAccacctacatcaaataataataataataataataataataataataataataataataataataataatgcgggATCACGGTGGGGTGCTCTGCCAGCCAGAAACGGATGGGGCAACAGAAGTTGTGGTAGTTGGGATCGGCGCGAAGTGAATCCCTTCGGGGATCAGGAGGAGGCAGCAGCAGCGTTTGGCGGCGAGGAGCAGCAGGAAAACACGGGAATTAACTTCGATGCGTATGAGGACATTCCGGTGGAGACGAGCGGTGAAAACGTGCCCCCGGCTGTGAATACTTTTGCGGAGATTGACTTGGGCGACGCGCTTAGTCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCGGTTCAGCGGCATGCCATACCGATATCCCTTGCGGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCAATCATCAATGGGATTATGAGAGGCCAAGCCCAACCCCTCCAGAGGCCCCCTCGCGGCGTCCGCATAGTCTACCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCCATGCAGATACATGAAGAGGCTAGAAAGTTTTCATACCAGACAGGGGTTAGGGTCGTTGTTGCTTATGGTGGAGCTCCAATTAATCAGCAGCTCCGGGAACTTGAGAGAGGGGTGGATATCCTTGTTGCAACTCCAGGAAGATTGGTAGATTTACTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCCTTAGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCCCCAGCAGGTGCCAGACAGACTATGCTGTTCAGTGCTACATTTCCAAAAGAGATACAGAGACTTGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCACAGAAGGCAAACGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTCTAGAGCACTGGTTGTGCCGTAATAGTTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTGGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAAGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAGGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACAGTAGTGGATATGGCAATTCTGGTGTGTATGGTGCAGGATACGGTCCTGGGGTAACCAGTGCTTGGGACTGA 1812 0.4719 MRTSWADLAANSAPENAGTSNSTAPSRPVYVPPHLRNRGPSESPAPPPTSNNNNNNNNNNNNNNNNNNNAGSRWGALPARNGWGNRSCGSWDRREVNPFGDQEEAAAAFGGEEQQENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGDALSQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIINGIMRGQAQPLQRPPRGVRIVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANGVQGKQALTLVFVETKKGADSLEHWLCRNSFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPDWLSRYAARSSFGGGRNRRSGGSRFGGRDFRREGSFSRGGSDYYSAGNNSSGYGNSGVYGAGYGPGVTSAWD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02572 603 MobiDBLite consensus disorder prediction 1 52 - -
Gma11g02572 603 Gene3D - 99 362 IPR027417 -
Gma11g02572 603 Pfam Helicase conserved C-terminal domain 384 499 IPR001650 -
Gma11g02572 603 Pfam DEAD/DEAH box helicase 166 349 IPR011545 GO:0003676|GO:0005524
Gma11g02572 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 360 IPR014001 -
Gma11g02572 603 Gene3D - 363 542 IPR027417 -
Gma11g02572 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 575 - -
Gma11g02572 603 CDD SF2_C_DEAD 372 508 - -
Gma11g02572 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 517 IPR027417 -
Gma11g02572 603 CDD DEADc_DDX3_DDX4 143 366 IPR044763 GO:0003724|GO:0005524
Gma11g02572 603 MobiDBLite consensus disorder prediction 1 27 - -
Gma11g02572 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 371 538 IPR001650 -
Gma11g02572 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Gma11g02572 603 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 48 575 - -
Gma11g02572 603 SMART helicmild6 418 499 IPR001650 -
Gma11g02572 603 SMART ultradead3 161 375 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02572 Gma-Chr11 40710424 40717951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02572 126 531 Eukaryotic Initiation Factors Gene Family AT3G19760 30.488 3.07e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02572 K11594 - gmx:100784557 1068.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00011 18 105722 110469 Gma11g02572 11 40710424 40717951 GST