Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g02572 | ATGCGAACTTCATGGGCTGATTTGGCTGCCAATTCGGCGCCTGAAAATGCGGGAACCTCTAACTCCACAGCTCCTTCGCGGCCGGTTTATGTGCCTCCGCATCTGAGAAACCGTGGACCATCGGAATCCCCTGCTCCAccacctacatcaaataataataataataataataataataataataataataataataataataataatgcgggATCACGGTGGGGTGCTCTGCCAGCCAGAAACGGATGGGGCAACAGAAGTTGTGGTAGTTGGGATCGGCGCGAAGTGAATCCCTTCGGGGATCAGGAGGAGGCAGCAGCAGCGTTTGGCGGCGAGGAGCAGCAGGAAAACACGGGAATTAACTTCGATGCGTATGAGGACATTCCGGTGGAGACGAGCGGTGAAAACGTGCCCCCGGCTGTGAATACTTTTGCGGAGATTGACTTGGGCGACGCGCTTAGTCAGAACATTAGACGCTGCAAATATGTGAAGCCAACGCCGGTTCAGCGGCATGCCATACCGATATCCCTTGCGGGACGGGATTTGATGGCTTGTGCGCAGACTGGTTCCGGAAAGACTGCAGCATTCTGTTTCCCAATCATCAATGGGATTATGAGAGGCCAAGCCCAACCCCTCCAGAGGCCCCCTCGCGGCGTCCGCATAGTCTACCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCCATGCAGATACATGAAGAGGCTAGAAAGTTTTCATACCAGACAGGGGTTAGGGTCGTTGTTGCTTATGGTGGAGCTCCAATTAATCAGCAGCTCCGGGAACTTGAGAGAGGGGTGGATATCCTTGTTGCAACTCCAGGAAGATTGGTAGATTTACTGGAGAGAGCTAGAGTTTCATTGCAGATGATCAGATATTTGGCCTTAGATGAGGCAGATAGAATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTAGAACAAATGGACATGCCCCCAGCAGGTGCCAGACAGACTATGCTGTTCAGTGCTACATTTCCAAAAGAGATACAGAGACTTGCCTCTGATTTCCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGATCTTCTTCATGCACAGAAGGCAAACGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTCTAGAGCACTGGTTGTGCCGTAATAGTTTTCCAGCAACTACTATTCATGGTGACAGGACACAACAGGAAAGAGAATTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTTGCAACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTTGCCCATGTGGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGAATTGGAAGGACAGGGCGAGCAGGAAAGAAAGGCCTGGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGATTGGCTCTCACGGTATGCTGCTCGCTCTTCCTTTGGTGGTGGAAGGAACCGTCGATCAGGAGGAAGCCGTTTTGGTGGCCGTGACTTTCGAAGAGAGGGTTCTTTTAGTAGGGGTGGTTCTGATTACTACAGTGCAGGAAACAACAGTAGTGGATATGGCAATTCTGGTGTGTATGGTGCAGGATACGGTCCTGGGGTAACCAGTGCTTGGGACTGA | 1812 | 0.4719 | MRTSWADLAANSAPENAGTSNSTAPSRPVYVPPHLRNRGPSESPAPPPTSNNNNNNNNNNNNNNNNNNNAGSRWGALPARNGWGNRSCGSWDRREVNPFGDQEEAAAAFGGEEQQENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGDALSQNIRRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIINGIMRGQAQPLQRPPRGVRIVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQKANGVQGKQALTLVFVETKKGADSLEHWLCRNSFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPDWLSRYAARSSFGGGRNRRSGGSRFGGRDFRREGSFSRGGSDYYSAGNNSSGYGNSGVYGAGYGPGVTSAWD | 603 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g02572 | 603 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Gma11g02572 | 603 | Gene3D | - | 99 | 362 | IPR027417 | - | |
Gma11g02572 | 603 | Pfam | Helicase conserved C-terminal domain | 384 | 499 | IPR001650 | - | |
Gma11g02572 | 603 | Pfam | DEAD/DEAH box helicase | 166 | 349 | IPR011545 | GO:0003676|GO:0005524 | |
Gma11g02572 | 603 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 173 | 360 | IPR014001 | - | |
Gma11g02572 | 603 | Gene3D | - | 363 | 542 | IPR027417 | - | |
Gma11g02572 | 603 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 48 | 575 | - | - | |
Gma11g02572 | 603 | CDD | SF2_C_DEAD | 372 | 508 | - | - | |
Gma11g02572 | 603 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 225 | 517 | IPR027417 | - | |
Gma11g02572 | 603 | CDD | DEADc_DDX3_DDX4 | 143 | 366 | IPR044763 | GO:0003724|GO:0005524 | |
Gma11g02572 | 603 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Gma11g02572 | 603 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 371 | 538 | IPR001650 | - | |
Gma11g02572 | 603 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 142 | 170 | IPR014014 | GO:0003724 | |
Gma11g02572 | 603 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN | 48 | 575 | - | - | |
Gma11g02572 | 603 | SMART | helicmild6 | 418 | 499 | IPR001650 | - | |
Gma11g02572 | 603 | SMART | ultradead3 | 161 | 375 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g02572 | Gma-Chr11 | 40710424 | 40717951 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g02572 | 126 | 531 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.488 | 3.07e-61 | 207 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g02572 | K11594 | - | gmx:100784557 | 1068.14 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma18g00011 | 18 | 105722 | 110469 | Gma11g02572 | 11 | 40710424 | 40717951 | GST |