Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma11g02534 | ATGGGAAGGGGAAGAGTGGAGTTGAAGAGGATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGGAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCAGTACGAGTTTTGCAGCGGTTCAAGCATGCTCAAAACGTTGGAGAGGTACCAGAAATGCAACTATGGAGCGCCTGAGGACAATGTGGCAACAAATGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATACTTGAGGCTGAAAGCACGTTATGAAGCTCTTCAGCGTTCTCAAAGGAACCTTATGGGAGAAGATCTTGGTCCTCTAAGCAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTAGATTCGTCTTTGAAACAAATCAGATCAATAAGGACCCAATTCATGCTGGATCAGCTTTCTGATCTACAACGAAAGGAACACTTTCTAGGTGAATCAAACAGAGATCTCATACAAAGGTTGGAAGAGTTTCAAATAAATCCACTTCAACTGAATCCTAGTGCTGAAGAAATGGGGCATGGACGCTATCCAGGTCAACCCCAAGGCCATGCTCTCTTTCAACCATTGGACTGTGAGCCAACCTTACAAATTGGATATCATCCTGATCCAGTATCAGTGGTGTCAGAAGGCCCAAGCATGAATAATTACATGGCAGGATGGTTACCATGA | 732 | 0.4426 | MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKQYEFCSGSSMLKTLERYQKCNYGAPEDNVATNEALVLELSSQQEYLRLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKQIRSIRTQFMLDQLSDLQRKEHFLGESNRDLIQRLEEFQINPLQLNPSAEEMGHGRYPGQPQGHALFQPLDCEPTLQIGYHPDPVSVVSEGPSMNNYMAGWLP | 243 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma11g02534 | 243 | ProSiteProfiles | K-box domain profile. | 91 | 181 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Gma11g02534 | 243 | Gene3D | - | 13 | 114 | IPR036879 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 230 | - | - | |
Gma11g02534 | 243 | Pfam | K-box region | 94 | 175 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Gma11g02534 | 243 | Coils | Coil | 128 | 148 | - | - | |
Gma11g02534 | 243 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 230 | - | - | |
Gma11g02534 | 243 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Gma11g02534 | 243 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Gma11g02534 | 243 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma11g02534 | Gma-Chr11 | 40442490 | 40446616 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma11g02534 | 1 | 243 | MADS-box Gene Family | AT1G24260 | 72.358 | 1.78e-117 | 333 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Gma11g02534 | K-box | 1.9e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma11g02534 | - | - | gmx:100794429 | 479.174 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma18g00047 | 18 | 392264 | 397142 | Gma11g02534 | 11 | 40442490 | 40446616 | GST | |
Gma05g01498 | 05 | 36856858 | 36864642 | Gma11g02534 | 11 | 40442490 | 40446616 | PCT | |
Gma08g00980 | 08 | 8287481 | 8294571 | Gma11g02534 | 11 | 40442490 | 40446616 | PCT |