Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02527 ATGGAGTGTAATGCAAAATCTCTCGGGCAATGGGACTGGGAGCACTTATTCTTCTTCAATACAAAAGCAGCTGAAAATCCAAGGTTACAACCAACTGATTGTAGCAGTGAAGCAGATCGGGAAATCAACGTTGGAATGTTGCATCCATCAGGTGGTAGTGCTTGTTCTGGCTCTGAACTAATACATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCAACAATTCATCATCAAATGGGGATAGCAAGGCATCTATATTGACTCTGGAAGGTTCTCATGATGATTCCACTGGGAAGAAAGAATTGTGCAATGGAGAGCCAATTGAAACTTCTCCTGCAGCAGTGCCCTCTCCTGTCTCTGGTGAACCGTTGCTCACTCTAAAGCTTGGTAAACGATTGTACTTTGAGGATGTCTGTACCGGAAGTGATTCCAAGAAACCATCTTCCTTTGACGTTCCCATTTCATCAGGAAAGAAACATAAAACCAGTAGTCAGACTTTACAGCATCCAAGCTGCCAGGTGGAAGGCTGTGGCCTTGACCTCTCATCTGCTAAAGATTACCATCGCAAACACCGAGTTTGTGAAGCTCATTCCAAATCCCCTAAGGTGGTTATAACTGGTTTGGAACGCCGATTTTGCCAGCAATGTAGCAGGTTCCATGCTCTGTCAGAGTTTGATGACAAAAAAAGAAGCTGTAGGCGACGTCTTTCAGATCACAATGCAAGGCGCCGCAAACCTCAGCCTGACTCAATCCAATTAAATCCATCAGCTTTGTCTTCATCACCCTATGATGGGAGGCAAATAGTGAGTCCATTTGCATTTTCAAGGACTGCCACAAATTTAGCTTGGCAAGATATGCACCCCCAGACAAAAGAATTTCTCCCGAAGCCTGCAAAAGCCTTCAATAAGATACCGAGTATTGTCTCCATGCTTTCTGATGATTCCAGTGGCCTTCTAACATCTAGAGGCATAGCAACGAAGAGTACTGTTCCAGATGTTGCAGGTATGGAAGATCCCATTAGGTTGTCTGATCCAAACGGTACACAAGATGTTAACCGTGCTCTCTCTCTTCTGTCAACGAATTCTTCATCTTCATGGGGTGCATATGAGACTAAGTCCCTTTCTTTGGAACACTCCACTCGGGCAACACACTCAATCACTCAGCATCACTTACCACTTCCTTCCTCGGCAGAGTATTGGCACACTGATCATCAACAACATTCAAGCATGTGTATCTCATTCACGGATTGCGATAGCAGCAATCGCTTTCAAGACTTTCAGCTGTTGAGCTCACCCTATGAATCACCTTTTCCTTGCAACCAACTGGATTAA 1332 0.4452 MECNAKSLGQWDWEHLFFFNTKAAENPRLQPTDCSSEADREINVGMLHPSGGSACSGSELIHASSSRSSKSASNNSSSNGDSKASILTLEGSHDDSTGKKELCNGEPIETSPAAVPSPVSGEPLLTLKLGKRLYFEDVCTGSDSKKPSSFDVPISSGKKHKTSSQTLQHPSCQVEGCGLDLSSAKDYHRKHRVCEAHSKSPKVVITGLERRFCQQCSRFHALSEFDDKKRSCRRRLSDHNARRRKPQPDSIQLNPSALSSSPYDGRQIVSPFAFSRTATNLAWQDMHPQTKEFLPKPAKAFNKIPSIVSMLSDDSSGLLTSRGIATKSTVPDVAGMEDPIRLSDPNGTQDVNRALSLLSTNSSSSWGAYETKSLSLEHSTRATHSITQHHLPLPSSAEYWHTDHQQHSSMCISFTDCDSSNRFQDFQLLSSPYESPFPCNQLD 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02527 443 MobiDBLite consensus disorder prediction 247 262 - -
Gma11g02527 443 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Gma11g02527 443 MobiDBLite consensus disorder prediction 141 168 - -
Gma11g02527 443 Pfam SBP domain 172 245 IPR004333 GO:0003677
Gma11g02527 443 MobiDBLite consensus disorder prediction 57 92 - -
Gma11g02527 443 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 442 IPR044817 GO:0003677
Gma11g02527 443 MobiDBLite consensus disorder prediction 142 168 - -
Gma11g02527 443 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 21 442 - -
Gma11g02527 443 MobiDBLite consensus disorder prediction 236 262 - -
Gma11g02527 443 MobiDBLite consensus disorder prediction 47 121 - -
Gma11g02527 443 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Gma11g02527 443 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02527 Gma-Chr11 40387077 40390292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02527 1 403 SBP-box Gene Family AT5G43270 39.019 5.21e-67 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gma11g02527 SBP 6.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02527 - - gmx:100796013 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00053 18 445809 448740 Gma11g02527 11 40387077 40390292 GST