Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02504 ATGGATGTTGTTGAGGCTGAAGAAAGTTTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTTTGCAATATATTGCAAGATATTGTCATTATTTCCTTCTTTAGAAGCTGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCAGCACTGCTCAGAGTGTAGTAAACTTTACTTGGCTATAACTGGGGATTCTGTTCTGCTAAAATTTGAGAAGGCTAAATGTGCTCTCGAGGACAGTCTTAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGAGGAAATTGTGAAAGAACTTGCAAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAGCAGGGAAGAAAGTTTAGTGACTCTAATGATAGTAATGAACTTGAATGTTTTCATCTGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAACAGCTCTTACAGAAAGAAGAGCTCTAAAAAAACTCATAGAAAGGGCTCGTGCTGAGGAAGACAAGCGGAAAGAATCAATTATTGCTTTTCTTTTACACCTTATGAGGAAATATTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTTGAGGATGGCATTCCCGGTGGTCATTGTCATGCCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAATTTTAAGCCAAATAATAGGAAATCAGGGCAGATGCTCCTTCCGCCAGAAGAGTTAAGGTGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGATTTGTATAGAGAAATGGTTCAGAGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTTCACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGGTTGGCATTATCAGACACTGAATCCACAAATTCAAGATCCGTAAACAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCTGTAGAAGAGAGTGGTATCTCAGAGCAAACAGGGGGAAATGCAACTGAAAGTTTTTCTGCACAAGAGGAAGATAATGAACGGTATCTTAGTTTTCTTAAAGTCTTGACAGAAGGAAACAATTGGAAGAGGAAGTGTAGAGTGGTTGAACAGTTGAGGCTGTTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGCACCAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCTTGAAGCGAATGTGATGGCTCTTGAAAATGGAGCTATGGCTCTGTTCAACTTGGCTGTGAATAACAATAGAAATAAGGAAATTATGATAGCAACAGGAATCTTGTCGTTGTTGGAGGAAATGATTTCAAAAACTAGTTCCTATGGTTGTGCAGTTGCCCTGTATCTGAATCTTTCTTGCCTCGATGAAGCCAAGCATGTGATTGGCACAAGTCAGGCTGTCCAGTTCCTAATCCAGATTCTTCAAGACAAGACAGAAGTGCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTGTGCCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCATTTGTAGCCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTGGCGGTTTCTCATGTGGGAAGAGAGAAATTGATGTTGGCTCCTGGACTTATAAGTGCCTTGGCTTCCACTCTAGACACTGGTGAGCCCATAGAGCAGGAGCAAGCTGCTTCTTGTCTCCTAATTTTGTGTAACAGGAGTGAGGAATGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCGGTGAATGGGACCTCGAGAGGAAGAGAGAAGGCTCAGAAGCTCTTGATGGTCTTCCGAGAGCAGCGACAACAAGACCATTCACCTGTTAAGACTGATCAACGTGAATCCGAAAGTAGTGATTTGTCTATGCCTCCTCCTGAAACCAAACTGCTATCTAAATCAATATCTAGAAGAAAGGTGGGGAAAGCTTTCAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2295 0.4166 MDVVEAEESFFAASDAKLHGEMCKCLFAIYCKILSLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIEEIVKELASTVFALDPSEKQVGDDLIALLQQGRKFSDSNDSNELECFHLAATRLGITSSRTALTERRALKKLIERARAEEDKRKESIIAFLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGIPGGHCHAFDRQLSKLSSFNFKPNNRKSGQMLLPPEELRCPISLQLMSDPVIIASGQTYERICIEKWFRDGHNTCPKTQQKLSHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDFNYWRLALSDTESTNSRSVNSVSSCKLKGVKVVPVEESGISEQTGGNATESFSAQEEDNERYLSFLKVLTEGNNWKRKCRVVEQLRLLLRDDEEARIFMGTNGFVEALMQFLQSAVLEANVMALENGAMALFNLAVNNNRNKEIMIATGILSLLEEMISKTSSYGCAVALYLNLSCLDEAKHVIGTSQAVQFLIQILQDKTEVQCKIDSLHALYNLSTVPSNIPNLLSSGIICSLQSLLVGQGDCMWTEKCIAVLINLAVSHVGREKLMLAPGLISALASTLDTGEPIEQEQAASCLLILCNRSEECCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMVFREQRQQDHSPVKTDQRESESSDLSMPPPETKLLSKSISRRKVGKAFSFLWKSKSYSVYQC 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02504 764 PANTHER U BOX DOMAIN-CONTAINING 1 754 - -
Gma11g02504 764 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Gma11g02504 764 MobiDBLite consensus disorder prediction 707 723 - -
Gma11g02504 764 SUPERFAMILY RING/U-box 276 354 - -
Gma11g02504 764 SUPERFAMILY ARM repeat 427 707 IPR016024 -
Gma11g02504 764 SMART arm_5 454 498 IPR000225 GO:0005515
Gma11g02504 764 SMART arm_5 539 580 IPR000225 GO:0005515
Gma11g02504 764 SMART arm_5 624 664 IPR000225 GO:0005515
Gma11g02504 764 CDD RING-Ubox_PUB 283 325 IPR045210 -
Gma11g02504 764 Coils Coil 175 195 - -
Gma11g02504 764 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 754 - -
Gma11g02504 764 Gene3D - 625 703 IPR011989 -
Gma11g02504 764 Gene3D - 421 624 IPR011989 -
Gma11g02504 764 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Gma11g02504 764 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Gma11g02504 764 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Gma11g02504 764 MobiDBLite consensus disorder prediction 707 736 - -
Gma11g02504 764 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02504 Gma-Chr11 40222143 40227526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02504 1 763 U-box Gene Family AT1G67530 66.498 0.0 1020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02504 - - gmx:100804344 1470.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00077 18 619464 623262 Gma11g02504 11 40222143 40227526 GST
Gma11g02504 11 40222143 40227526 Gma05g01477 05 36541817 36546607 PCT
Gma11g02504 11 40222143 40227526 Gma08g00958 08 8058855 8063131 PCT
Gma05g01477 05 36541817 36546607 Gma11g02504 11 40222143 40227526 PCT
Gma08g00958 08 8058855 8063131 Gma11g02504 11 40222143 40227526 PCT