Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02479 ATGGATAATGGTTGTTTCTCTTCCCCAAGACGTGATTTTCCTGCTGGTCTGAGAGTTCTAGTTGTGGATGATGATCCAACGTGGCTCAAGATCCTTGAGAAGATGCTCAAAAAGTGCAATTATGAAGTGACTACATGTTGTTTAGCAAGGCATGCTCTAAGCTTGCTTCGTGAAAGGAAGGATGGATATGATATAGTGATCAGCGATGTAAACATGCCCGACATGGATGGTTTTAAACTTCTTGAGCATGTTGGGCTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGGGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCCTGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTGAGAAACATATGGCAGCATGTCTTAAGAAAAAGGATACATGAGGCCAAAGAATTTGAAAGTTTTGAGAGTTTTGAGAGCATTCACTTGATGAGAAATGGATCAGAGCTATCAGATGATGGGAACCTGTTTGCGGTAGAAGATGTTACCTCAACAAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAAAGAATGTTTGGATCCATCATCCACCAAGAAAGCTAGAGTAGTCTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCGGTGAATCAGATTGGATTTGATAAAGTGGGGCCGAAGAAAATACTAGATCTGATGAATGTCCCATGGCTGACTAGAGAGAACGTTGCTAGCCACTTGCAGAAATACAGGCTTTATTTGAGTAGGATTCAGAAAGAAAACGATCAGAGATCTTCCTCAAGTGGATTGAAGCATTCAGATTTTCCTTTAAAAGATATGAGAAGTTTTGGTTTTCAGAACTCAGTAAACAACCAGCAACAAAACGATGTTGCCATTGACAGCTACAATCATTCGGATGGATCATTACAACTTCAGAATGTGGAAACTAAAAGTCACGAAGCGGATCCCAAGGGAATTGTTTCACAGTCCACCATAGCGAAAAAAGGAAGGATTTTGACTGGTAACATTGCTGACACAAATATGAGAGAGAGTTTAAGGGTTGGCCTTAATCAAACTTTTGCCCCTCTGGAGTCAGAAGAAAACCATGCAGTATTTGATTGTTCCATGCCAACACCATACACTTGGACTGAAGTTCCACACATGCAACTCAAAGAAGAACACAAGTCAATTGTTCATTTAGAAGATAGCTTCAATCAGTTGCCATTACATGGTAAGCAGCAGCAACACATCCAAGTGGATCAATCACAATCAGTTGCTTCAATTAGTTCCGCTCCCTTGATAACGGAGGAAGAGGTTGCTGCTTGTAAAGAGCCAAAACCTTTGTTTGCAGATTACAAGAATGATTATGCCAATTCTGTGAGTTCAATAGGGAATGCAGTTGGCACCTTTCCTATTCAACCAGGAAGTCTTATTATGAATGGTCAATCTTCAGAACCCATTTCCACCACAAATTCTGGATTGAAAACACAGGGATATAATAATCTCAGTAGCATTTCTGATCTGGAAATTTACCAAAGCAACCTTCTTTTGGGAGGTGAGGTAGCTTCTGCACCATCATTGGATGAGGACTTGCATTTCTATTGGCTACAAGGTGAATGCTATAATAATATGAACTTCAGTCTGCAGAATATAGGAATGTCTGAATATTATGATCCAGGACTTATTTCAGAAGCTCCAACACACTTATATGATTCAGCTGATTACTCAGTTATAGATCAAGGTCTATTCATAGCATGA 1758 0.3987 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAKEFESFESFESIHLMRNGSELSDDGNLFAVEDVTSTKKRKDADNKHDDKECLDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGLKHSDFPLKDMRSFGFQNSVNNQQQNDVAIDSYNHSDGSLQLQNVETKSHEADPKGIVSQSTIAKKGRILTGNIADTNMRESLRVGLNQTFAPLESEENHAVFDCSMPTPYTWTEVPHMQLKEEHKSIVHLEDSFNQLPLHGKQQQHIQVDQSQSVASISSAPLITEEEVAACKEPKPLFADYKNDYANSVSSIGNAVGTFPIQPGSLIMNGQSSEPISTTNSGLKTQGYNNLSSISDLEIYQSNLLLGGEVASAPSLDEDLHFYWLQGECYNNMNFSLQNIGMSEYYDPGLISEAPTHLYDSADYSVIDQGLFIA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02479 585 CDD REC_typeB_ARR-like 19 133 - -
Gma11g02479 585 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Gma11g02479 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 559 IPR045279 GO:0009736
Gma11g02479 585 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Gma11g02479 585 SMART REC_2 17 129 IPR001789 GO:0000160
Gma11g02479 585 Gene3D - 17 186 - -
Gma11g02479 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 559 - -
Gma11g02479 585 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Gma11g02479 585 Gene3D - 195 258 - -
Gma11g02479 585 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Gma11g02479 585 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Gma11g02479 585 SUPERFAMILY CheY-like 16 147 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02479 Gma-Chr11 40051924 40055959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02479 13 265 Response Regulator Gene Family AT2G25180 56.641 1.00e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gma11g02479 Response_reg 2.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02479 - K14491 gmx:100797421 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00099 18 777617 781581 Gma11g02479 11 40051924 40055959 GST
Gma11g02479 11 40051924 40055959 Gma05g01454 05 36378344 36383105 PCT
Gma11g02479 11 40051924 40055959 Gma08g00937 08 7901978 7906260 PCT
Gma05g01454 05 36378344 36383105 Gma11g02479 11 40051924 40055959 PCT
Gma08g00937 08 7901978 7906260 Gma11g02479 11 40051924 40055959 PCT