Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02478 ATGTGGCAAAATCAGCCCAACAATTCTTCTTACAGTGATTCCGTCAAGGCTCTCGAAGATGATATGCAACATGCTAATACCCTGGCATCAACACTTCCTCGATATTATGATGGGAACTATTTTCAGATGAAATTATCTTACAGCCCCTTTGCTCCTATTTTTTTGTACTTGATCGAATGGTTGGATTTTAGTTGTACAGACACTTTGCCCATGTATTTAGTTGTCACTATCACTTCTGCTGTCATATACCCTTCATTAAGGTTACTTCAAGGCGAGTTTAATAATGATAAAAGAAACAGTTGTGCAGAACTGAGCAGAAAGAGGCTTGAAAAGGTTCTCAGTAAAGATCTAGAGGGAGATGAGGAATGTGGCATATGCATGGAAAACGGCATGAAGATGGTTCTGCCTAATTGTGGACATTCTTTGTGCATTAGCTGCTTCCATGATTGGTATATGAGATCAGAATCATGCCCATTTTGCCGTGGAAACCTGAGGAGGATCAATCCTAGAGATTTATGGGTGGTTATTGGCAGCAGTGATGTGGTTGACAGGATTACCATTGCAAAGGAGAATTTAAGATGTCTCTACCTTTACATTGAAACTCTGCCTCCAATCATATCGGATGCACATGTACATACATTCAATTACATGCAATAA 657 0.3957 MWQNQPNNSSYSDSVKALEDDMQHANTLASTLPRYYDGNYFQMKLSYSPFAPIFLYLIEWLDFSCTDTLPMYLVVTITSAVIYPSLRLLQGEFNNDKRNSCAELSRKRLEKVLSKDLEGDEECGICMENGMKMVLPNCGHSLCISCFHDWYMRSESCPFCRGNLRRINPRDLWVVIGSSDVVDRITIAKENLRCLYLYIETLPPIISDAHVHTFNYMQ 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02478 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 170 IPR013083 -
Gma11g02478 218 Pfam Zinc finger, C3HC4 type (RING finger) 120 166 - -
Gma11g02478 218 ProSiteProfiles Zinc finger RING-type profile. 123 161 IPR001841 -
Gma11g02478 218 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 3 71 - -
Gma11g02478 218 PANTHER RING-H2 FINGER PROTEIN ATL47-LIKE 79 217 - -
Gma11g02478 218 SUPERFAMILY RING/U-box 111 166 - -
Gma11g02478 218 SMART ring_2 123 160 IPR001841 -
Gma11g02478 218 PANTHER RING FINGER PROTEIN 41, 151 3 71 - -
Gma11g02478 218 PANTHER RING FINGER PROTEIN 41, 151 79 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02478 Gma-Chr11 40036487 40040304 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02478 87 200 C3H Transcription Factor Family AT2G20030 31.496 5.69e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02478 - - gmx:100805014 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00100 18 788195 790691 Gma11g02478 11 40036487 40040304 GST