Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma11g02467 ATGGAAATTCCAATTCCGCTCTCATTTATGTTACTCTTACTACTTGTACCTTCCTGCATTTGCTCTTCCCCACTTCAAGATCCTGAACTAGTGGTTGAAGATGTACAAAAGAGCATTAATGCCTCAAGGAGGAACTTAGCATTTCTTTCTTGTGGAACGGGGAACCCCATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAAGAACCGGAAGCGTCTAGCAGATTGTTCCATTGGGTTTGGTAAGCATGCCGTTGGGGGAAGGGATGGTAAAATATATGTGGTGACTGACCCCGGTGATCACCCTGTGAACCCCAAGCCAGGAACACTAAGATATGGTGTGATCCAAGAGGAGCCATTGTGGATCATATTCAAGCGTGACATGGTGATCAAGCTCAAGCAAGAGCTTATGATGAATTCTTTCAAGACAATTGACGGTAGAGGAGCAAGTGTGCACATTGCTGGTGGACCTTGCATCACTATACAGTATGTGACCAACATTATCATTCATGGGATTAACATCCATGACTGCAAGCAAGGAGGGAATGCCTATGTGAGGGATTCCCCTACACATTATGGGTGGAGGACACTCTCGGATGGTGATGGAGTGTCAATCTTTGGTGGGAGTCATGTTTGGGTGGACCACTGCTCTCTCTCCAATTGCCGTGATGGGTTAATTGATGCCATCCATGGATCCACAGGCATCACCATATCCAACAATTACTTGACCCACCATAACAAGGTCATGCTTTTGGGCCACAGTGACACTTTCACTAGGGACAAGAACATGCAAGTCACCATTGCCTTCAACCATTTTGGAGAAGGGCTAGTGCAGAGAATGCCAAGATGCAGGCATGGATACTTCCATGTGGTGAACAATGACTACACCCATTGGAGAATGTATGCCATAGGGGGGAGTGCTGCCCCAACTATCAATAGCCAAGGGAATAGATTTCTTGCTCCCAATGACAATACCTTCAAAGAGGTGACAAAGAGGGAGAATTCAGCACAGAGCAAGTGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTAAACGGTGCGTTTTTTACGGCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCATCTAGTTTGGCAGCAAAATCATCTTCACTTGTGAGTTCTATAACAGCATCAGCTGGATCACTTAGCTGCAGAAAGGGTTCACGCTGCTGA 1209 0.4591 MEIPIPLSFMLLLLLVPSCICSSPLQDPELVVEDVQKSINASRRNLAFLSCGTGNPIDDCWRCDPNWEKNRKRLADCSIGFGKHAVGGRDGKIYVVTDPGDHPVNPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTGITISNNYLTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKRENSAQSKWKNWNWRSSGDLMLNGAFFTASGAGASSSYARASSLAAKSSSLVSSITASAGSLSCRKGSRC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma11g02467 402 PANTHER PECTATE LYASE 9 399 - -
Gma11g02467 402 SMART amb_all 128 325 IPR002022 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Gma11g02467 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Gma11g02467 402 Gene3D - 54 395 IPR012334 -
Gma11g02467 402 PANTHER PECTATE LYASE 18-RELATED 9 399 IPR045032 GO:0030570
Gma11g02467 402 SUPERFAMILY Pectin lyase-like 39 396 IPR011050 -
Gma11g02467 402 Pfam Pectate lyase 134 319 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma11g02467 Gma-Chr11 39947114 39949450 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma11g02467 7 402 Polysaccharide Lyase AT5G63180 77.723 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma11g02467 K01728 - gmx:100816256 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00110 18 877923 879819 Gma11g02467 11 39947114 39949450 GST